AMBER Archive (2006)

Subject: Re: AMBER: Ring of dna

From: Bill Ross (
Date: Fri Jul 14 2006 - 12:23:07 CDT

> bond ade.1.P ade.94.O3T

You have to start names with the unit name for the whole system,
and use literal residue names like in the pdb. Also I believe
O3T implies you are trying to bond off a terminal residue which
is wrong.

The AMBER Mail Reflector
To post, send mail to
To unsubscribe, send "unsubscribe amber" to