AMBER Archive (2006)

Subject: Re: AMBER: help creating RNA

From: Vlad Cojocaru (
Date: Fri Jun 23 2006 - 03:14:24 CDT

Did you look at the NAMOT program ?? ....

vlad wrote:

>Dear all,
>I have been fighting with leap in trying to build a simple RNA molecule. I've
>been creating a DNA molecule and then modifying the .pdb file by changing the
>residue names from "A" to "RA" for instance, but leap seems to complain quit a
>bit. Can some one give me a quick protocol as to how to create an RNA molecule?
>Seth Lilavivat
>Georgia Institute of Technology
>The AMBER Mail Reflector
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Dr. Vlad Cojocaru
EML Research gGmbH
Molecular and Cellular Modeling Group
Schloss-Wolfsbrunnenweg 33
69118 Heidelberg, Germany
Phone: +49-6221-533266
Fax: +49-6221-533298

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