AMBER Archive (2006)

Subject: Re: AMBER: help creating RNA

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Did you look at the NAMOT program ?? ....

vlad

sethl_at_gatech.edu wrote:

>--
>
>Dear all,
>
>I have been fighting with leap in trying to build a simple RNA molecule. I've
>been creating a DNA molecule and then modifying the .pdb file by changing the
>residue names from "A" to "RA" for instance, but leap seems to complain quit a
>bit. Can some one give me a quick protocol as to how to create an RNA molecule?
>
>Thanks,
>Seth Lilavivat
>Georgia Institute of Technology
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-- 
Dr. Vlad Cojocaru
EML Research gGmbH
Molecular and Cellular Modeling Group
Schloss-Wolfsbrunnenweg 33
69118 Heidelberg, Germany
Phone: +49-6221-533266
Fax: +49-6221-533298
e-mail: Vlad.Cojocaru_at_eml-r.villa-bosch.de
http://projects.villa-bosch.de/mcm/people/cojocaru/
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