AMBER Archive (2006)

Subject: AMBER: help creating RNA

Date: Thu Jun 22 2006 - 14:14:06 CDT


Dear all,

I have been fighting with leap in trying to build a simple RNA molecule. I've been creating a DNA molecule and then modifying the .pdb file by changing the residue names from "A" to "RA" for instance, but leap seems to complain quit a bit. Can some one give me a quick protocol as to how to create an RNA molecule?

Thanks, Seth Lilavivat Georgia Institute of Technology ----------------------------------------------------------------------- The AMBER Mail Reflector To post, send mail to To unsubscribe, send "unsubscribe amber" to