AMBER Archive (2006)

Subject: Re: AMBER: How to strip waters in trajectorie ?

From: Gustavo Seabra (
Date: Mon Jun 12 2006 - 14:57:30 CDT

You can use ptraj to do that. The fist example for ptraj in the amber
manual does that.

Gustavo Seabra.

On 6/12/06, jitrayut jitonnom <> wrote:
> Dear amber users
> I am a new users for amber so could anyone explain me about how to strip
> waters in a trajectorie file that obtained from explicit MD ? or maybe, what
> is an example of the script to do this ? These are my questions needed the
> answers from anyone.
> Thanks in advance for any suggestions
> Best regard
> Jitrayut
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