AMBER Archive (2006)

Subject: Re: AMBER: How to strip waters in trajectorie ?

From: David A. Case (case_at_scripps.edu)
Date: Mon Jun 12 2006 - 15:06:19 CDT

On Tue, Jun 13, 2006, jitrayut jitonnom wrote:
>
> I am a new users for amber so could anyone explain me about how to strip
> waters in a trajectorie file that obtained from explicit MD ? or maybe, what
> is an example of the script to do this ? These are my questions needed the
> answers from anyone.

Note also that there is a (relatively recent) detailed mm-pbsa tutorial
at the Amber web site. That might help answer in some of the questions
you might have just by reading the manual.

...good luck...dac

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