AMBER Archive (2006)

Subject: Re: AMBER: Umbrella sampling

From: Ilyas Yildirim (yildirim_at_pas.rochester.edu)
Date: Sat Jun 10 2006 - 09:53:41 CDT

>
> And I want to fix this two molecule on one axis (eg, fix their centers of
> mass on y=0, z=0)
>
> How can I fix this two molecule on one axis with Amber program?
>
> I expect to give me any suggestions.

Check out the program 3DNA, if your molecule is composed of nucleic acids. 

-- 
  Ilyas Yildirim
  ---------------------------------------------------------------
  - Department of Chemisty       -				-
  - University of Rochester      -				-
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  - Rochester, NY 14627-0216     - Ph.:(585) 275 67 66 (Office)	-
  - http://www.pas.rochester.edu/~yildirim/			-
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