AMBER Archive (2006)

Subject: Re: AMBER: xleap problem

From: Myunggi Yi (
Date: Tue Jun 06 2006 - 18:32:16 CDT

There is no saveAmberPrep in "leap" command from the manual.
You may want to read "Antechamber" manual.

On 6/6/06, Hashem Taha <> wrote:
> i am trying to make prep file (from my pdb file) using xleap, but every time
> i try to use 'saveAmberPrep unit file.prep' xleap says that it's saving the
> prep file (saving prep, residue unit ...), but it just freezes at that point
> and crashes. I have tried doing this on several computers, all of which gave
> the same result. there were no errors in the unit after using 'check unit'
> and all the connect points were set properly. There were also no error
> messages given. I don't what is going on. any help is appreciated. the pdb
> file of the molecule i am using is attached if needed.

Best wishes,

MYUNGGI YI ================================== KLB 419 Institute of Molecular Biophysics Florida State University Tallahassee, FL 32306

Office: (850) 645-1334 ----------------------------------------------------------------------- The AMBER Mail Reflector To post, send mail to To unsubscribe, send "unsubscribe amber" to