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AMBER Archive (2006)Subject: AMBER: trajin and rms
From: a a (patd_2_at_hotmail.com)
Dear Sir/Madam,
Thank you very much for your help!
I try to do the tutorial section 3.3.2) Calculating the RMSd vs. time.
However, when I tryped the commands, the following error messages appeared,
[PATH]$ trajin polyAT_vac_md1_12Acut.mdcrd
[PATH$ rms first mass out polyAT_vac_md1_12Acut.rms time 0.1
[PATH]$ ptraj polyAT_vac.prmtop < polyAT_vac_md1_12Acut.calc_rms
Could you mind to teach me what should I do to solve this problem?
Best regards,
Annie
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