AMBER Archive (2006)

Subject: RE: AMBER: Problem with running xleap remotely

From: heaton_at_chem.utah.edu
Date: Sat May 20 2006 - 15:43:53 CDT

The installation of Amber I'm using (Amber 8) is through
/uufa/bioinfo.utah.edu

I have defined the path in my .login file as follows:

setenv AMBERHOME
/uufs/bioinfo.utah.edu/common/amberfs/AMBER/opteron/amber8/pathscale-serial-static
setenv PATH "${AMBERHOME}/exe:$PATH"

I am accessing this using the XWindows driver X-Win32. I have not had
problems
running it in the past, so I assume that I have configured the SSH connection
correctly on my computer.

I am unsure of where the problem is coming from.

Regards,

A. Heaton

Quoting Ross Walker <ross_at_rosswalker.co.uk>:

>
>> marchingmen.chpc.utah.edu. I connect to
>> the server with tunneling on, however it gives me the following error:
>>
>> _X11TransSocketINETConnect: Can't get address for localhost
>> Error: Can't open display: localhost:14.0
>>
>> I ran other programs (Matlab, Firefox, etc.) from the server
>> to check the X11
>> tunneling, and they run just fine. Any suggestions on how to
>> fix this would be
>> useful.
>
> Where is the installation of Amber you are using on this machine?
>
> I just installed Amber9 in my home directory on marchingmen and I can run
> xleap over an ssh connection to marchingmen from SDSC fine. Check your
> .cshrc file to see if it is doing anything strange with exporting displays
> etc.
>
> Also how are you connecting to this machine? With ssh I assume. And you are
> using SSH tunnelling to export the display back to your machine? I.e. you
> are NOT doing setenv DISPLAY=blah blah blah?
>
> All the best
> Ross
>
> /\
> \/
> |\oss Walker
>
> | HPC Consultant and Staff Scientist |
> | San Diego Supercomputer Center |
> | Tel: +1 858 822 0854 | EMail:- ross_at_rosswalker.co.uk |
> | http://www.rosswalker.co.uk | PGP Key available on request |
>
> Note: Electronic Mail is not secure, has no guarantee of delivery, may not
> be read every day, and should not be used for urgent or sensitive issues.
>
>
> -----------------------------------------------------------------------
> The AMBER Mail Reflector
> To post, send mail to amber_at_scripps.edu
> To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu
>

-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu