AMBER Archive (2006)

Subject: RE:AMBER: leap: syntax error when use source command

From: Kateryna Miroshnychenko (
Date: Wed Mar 01 2006 - 06:58:22 CST

> Hello.
> I am trying to construct a unit containing my protein with ff99 atom types and
> ligand with gaff atom types. To do this I run leap with the command
> $xleap -s -f $AMBERHOME/dat/leap/cmd/leaprc.ff99
> and then load gaff.dat with
>>source gaff.dat
> But it gives me a plenty of lines "ERROR: syntax error" after each line of
> gaff.dat. So i can't save any parameter file.
> It's very interesting that this problem appeared _after_ application of
> bugfixes. Before application of bugfixes there were no such error. Are there
> any solutions? Am i doing something wrong?

try source leaprc.gaff

 Kateryna Miroshnychenko
post-graduate student
Department of Biological Physics,
Institute of Radiophysics and Electronics,
National Academy of Sciences of Ukraine,
12, Proskura st., Kharkiv, 61085, Ukraine

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