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AMBER Archive (2004)Subject: RE: AMBER: amber8 compilation
From: Ross Walker (ross_at_rosswalker.co.uk)
Dear Lucian,
/\
| Department of Molecular Biology TPC15 |
_____
From: owner-amber_at_scripps.edu [mailto:owner-amber_at_scripps.edu] On Behalf Of
Hello all,
I have been trying to compile amber8 various machines and with different
My latest attempt is a i686 cluster running Linux 2.4.18 -14 smp. I have
I used ./configure -ifort before running the make file.
Could anyone help with this problem? Could anyone email my a zip of the
Thanks!
Here's some additional information about the outcome:
THE EXECUTABLES CREATED ARE:
-rwxrwxr-x 1 ben ben 846944 Nov 19 13:18 addles
-rwxrwxr-x 1 ben ben 49745 Nov 19 13:19 am1bcc
-rwxrwxr-x 1 ben ben 561453 Nov 19 13:19 ambmask
-rwxrwxr-x 1 ben ben 599652 Nov 19 13:19 ambpdb
-rwxrwxr-x 1 ben ben 766546 Nov 19 13:19 anal
-rwxrwxr-x 1 ben ben 121294 Nov 19 13:20 antechamber
-rwxrwxr-x 1 ben ben 89056 Nov 19 13:20 atomtype
-rwxrwxr-x 1 ben ben 119122 Nov 19 13:20 bondtype
-rwxrwxr-x 1 ben ben 4785 Nov 19 13:19 calcpka.pl
-rw-rw-r-- 1 ben ben 24855 Nov 19 13:19 CPin.pm
-rwxrwxr-x 1 ben ben 4641 Nov 19 13:19 cpinutil.pl
-rwxrwxr-x 1 ben ben 58143 Nov 19 13:20 crdgrow
-rwxrwxr-x 1 ben ben 29354 Nov 19 13:20 database
-rwxrwxr-x 1 ben ben 1754657 Nov 19 13:19 divcon
-rwxrwxr-x 1 ben ben 18107 Nov 19 13:20 espgen
-rwxrwxr-x 1 ben ben 594981 Nov 19 13:19 fantasian
-rwxrwxr-x 1 ben ben 504115 Nov 19 13:19 gwh
-rwxr-xr-x 1 ben ben 28803 Nov 19 13:19 makeANG_RST
-rwxr-xr-x 1 ben ben 5955 Nov 19 13:19 makeCHIR_RST
-rwxrwxr-x 1 ben ben 523786 Nov 19 13:19 make_crd_hg
-rwxr-xr-x 1 ben ben 9594 Nov 19 13:19 makeDIP_RST.dna
-rwxr-xr-x 1 ben ben 3316 Nov 19 13:19 makeDIP_RST.protein
-rwxr-xr-x 1 ben ben 32014 Nov 19 13:19 makeDIST_RST
-rwxr-xr-x 1 ben ben 9234 Nov 19 13:19 makeSHF_RST
-rwxrwxr-x 1 ben ben 2146 Nov 19 13:19 mm_pbsa.pl
-rwxrwxr-x 1 ben ben 1036 Nov 19 13:19 mm_pbsa_statistics.pl
-rwxrwxr-x 1 ben ben 89827 Nov 19 13:19 molsurf
-rwxrwxr-x 1 ben ben 496076 Nov 19 13:18 new2oldparm
-rwxrwxr-x 1 ben ben 1170289 Nov 19 13:19 nmode
-rwxrwxr-x 1 ben ben 470939 Nov 19 13:19 nucgen
-rwxrwxr-x 1 ben ben 28977 Nov 19 13:20 parmcal
-rwxrwxr-x 1 ben ben 96811 Nov 19 13:20 parmchk
-rwxrwxr-x 1 ben ben 1399542 Nov 19 13:19 pbsa
-rwxrwxr-x 1 ben ben 491845 Nov 19 13:19 pol_h
-rwxrwxr-x 1 ben ben 71364 Nov 19 13:20 prepgen
-rwxrwxr-x 1 ben ben 507158 Nov 19 13:19 protonate
-rwxrwxr-x 1 ben ben 1110792 Nov 19 13:19 ptraj
-rwxrwxr-x 1 ben ben 1110792 Nov 19 13:19 rdparm
-rw-rw-r-- 1 ben ben 865 Nov 19 13:20 README
-rwxrwxr-x 1 ben ben 594678 Nov 19 13:19 resp
-rwxrwxr-x 1 ben ben 31256 Nov 19 13:20 respgen
-rwxrwxr-x 1 ben ben 2302353 Nov 19 13:18 sander
-rwxrwxr-x 1 ben ben 2316139 Nov 19 13:19 sander.LES
-rwxrwxr-x 1 ben ben 2852310 Nov 19 13:19 sander.QMMM
-rwxrwxr-x 1 ben ben 8304 Nov 19 13:19 senergy
-rwxrwxr-x 1 ben ben 15475 Nov 19 13:19 sviol
-rwxrwxr-x 1 ben ben 2049 Nov 19 13:19 sviol2
-rwxrwxr-x 1 ben ben 615538 Nov 19 13:20 teLeap
-rwxrwxr-x 1 ben ben 348 Nov 19 13:20 tleap
-rwxrwxr-x 1 ben ben 393 Nov 19 13:20 xleap
THE FINAL SCREEN OF THE COMPILATION PROCESS IS:
xaHBondParmTable.c: At top level:
xaHBondParmTable.c:423: parse error before "wCreated"
xaHBondParmTable.c: In function `XAHPTNewPopupTable':
xaHBondParmTable.c:426: `hptPNew' undeclared (first use in this function)
xaHBondParmTable.c:431: parse error before ')' token
xaHBondParmTable.c:431: parse error before ')' token
xaHBondParmTable.c:433: `fCallback' undeclared (first use in this function)
xaHBondParmTable.c:434: `wWidget' undeclared (first use in this function)
xaHBondParmTable.c:435: `psParmSet' undeclared (first use in this function)
xaHBondParmTable.c:440: `wCreated' undeclared (first use in this function)
make[2]: [xaHBondParmTable.o] Error 1 (ignored)
gcc -o xaLeap basics.o sysdepend.o stringExtra.o varArray.o getline.o avl.o
gcc: xTank.o: No such file or directory
gcc: xAction.o: No such file or directory
gcc: xBasics.o: No such file or directory
gcc: xaLeapc.o: No such file or directory
gcc: xaUnitEditor.o: No such file or directory
gcc: xaTable.o: No such file or directory
gcc: xaAtomTable.o: No such file or directory
gcc: XrawRegistr.o: No such file or directory
gcc: xaCommand.o: No such file or directory
gcc: xaTools.o: No such file or directory
gcc: xaAtomParmTable.o: No such file or directory
gcc: xaBondParmTable.o: No such file or directory
gcc: xaAngleParmTable.o: No such file or directory
gcc: xaParmEditor.o: No such file or directory
gcc: xaTorsionParmTable.o: No such file or directory
gcc: xaImproperParmTable.o: No such file or directory
gcc: xaHBondParmTable.o: No such file or directory
gcc: ../Xraw/libXaw.a: No such file or directory
gcc: ../Wc/libWcLeap.a: No such file or directory
gcc: ../Xpm/libXpm.a: No such file or directory
gcc: ../Xmu/libXmu.a: No such file or directory
make[2]: [xaLeap] Error 1 (ignored)
m4 xaLeap.rm4 > XaLeap_wcl
gcc -c -I/usr/X11R6/include -O2 -o tLeap.o tLeap.c
gcc -o teLeap basics.o sysdepend.o stringExtra.o varArray.o getline.o avl.o
mv xaLeap teLeap ../../../../exe
mv: cannot stat `xaLeap': No such file or directory
make[2]: [install] Error 1 (ignored)
mv XaLeap_wcl ../../../../dat
make[2]: Leaving directory `/tmp/usr/ben/lucian/amber8/src/leap/src/leap'
Copying shell scripts
cp xleap tleap ../../exe
Copying pixmaps
mkdir ../../dat/pixmap
( cd pixmap ;\
cp `find . -name CVS -prune -o -type f -print ` ../../../dat/pixmap \
)
Finished with the install of LEaP
make[1]: Leaving directory `/tmp/usr/ben/lucian/amber8/src/leap'
Installation of Amber8 (serial) is complete at Fri Nov 19 13:20:41 EST 2004.
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