AMBER Archive (2004)

Subject: RE: AMBER: Problem with carnal on linux

From: Ross Walker (ross_at_rosswalker.co.uk)
Date: Fri Nov 19 2004 - 11:36:08 CST

http://amber.scripps.edu/bugfixes/6.0/bugfix.24

> -----Original Message-----
> From: owner-amber_at_scripps.edu
> [mailto:owner-amber_at_scripps.edu] On Behalf Of Sébastien Fiorucci
> Sent: 19 November 2004 06:13
> To: amber_at_scripps.edu
> Subject: AMBER: Problem with carnal on linux
>
> Dear Amber users,
>
> I have the following problem using carnal (AMBER6.0) on redhat 7.3:
>
> when I specify more than one file in the streams section of the input
> file, carnal crashes (see the files below), while with a
> single file it
> doesn't. _
> __________
> Input file :_
>
> FILES_IN
> PARM p1 parm.top;
> STREAM s1 mdcrd16 mdcrd16b;
> FILES_OUT
> COORD c1 trajpdb.pdb PDB;
> DECLARE
> GROUP g1 s1 (RES 1 - 350);
> IMAGE i1 g1%cmass;
> OUTPUT
> COORD c1 i1;
> END
>
> _________
> _output file :
>
> _ - CARNAL -
> AMBER 6.0
>
> COORDINATE ANALYSIS
>
>
> input stdin
> > FILES_IN
> > PARM p1 parm.top;
> Reading parm file (parm.top)
> parm: opening parm.top
> parm.top title:
>
>
>
> > STREAM s1 mdcrd16 mdcrd16b;
> Using default parm (parm.top) for STREAM s1
> (box will be read from stream)
> stream: opening mdcrd16b
>
> _________________
>
> However, using exactly the same input and crd files on another
> machine (sgi indigo or sun ultrasparc) everything works fine.
>
> Did someone face this problem and is it a bug fixed in
> following version
> of AMBER?
>
> Thanks in advance.
>
> --
> Sébastien Fiorucci
> Université de Nice Sophia-Antipolis.
> Laboratoire Arômes Synthèses Interactions
> Faculté des Sciences
> 28, Avenue Valrose
> F 06108 Nice Cedex 2. France
> tel : 33/(0)4 92 07 27 10
> fax : 33/(0)4 92 07 61 25
> web: www.unice.fr/lasi
> email : Sebastien.Fiorucci_at_unice.fr
>
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