AMBER Archive (2004)

Subject: AMBER: Problem with carnal on linux

From: Sébastien Fiorucci (Sebastien.fiorucci_at_unice.fr)
Date: Fri Nov 19 2004 - 08:13:26 CST

Dear Amber users,

I have the following problem using carnal (AMBER6.0) on redhat 7.3:

when I specify more than one file in the streams section of the input
file, carnal crashes (see the files below), while with a single file it
doesn't. _
__________
Input file :_

FILES_IN
  PARM p1 parm.top;
  STREAM s1 mdcrd16 mdcrd16b;
FILES_OUT
  COORD c1 trajpdb.pdb PDB;
DECLARE
  GROUP g1 s1 (RES 1 - 350);
  IMAGE i1 g1%cmass;
OUTPUT
  COORD c1 i1;
END

_________
_output file :

_ - CARNAL -
              AMBER 6.0

              COORDINATE ANALYSIS

input stdin
> FILES_IN
> PARM p1 parm.top;
Reading parm file (parm.top)
parm: opening parm.top
parm.top title:
                                                                                

> STREAM s1 mdcrd16 mdcrd16b;
Using default parm (parm.top) for STREAM s1
 (box will be read from stream)
stream: opening mdcrd16b

_________________

However, using exactly the same input and crd files on another
machine (sgi indigo or sun ultrasparc) everything works fine.

Did someone face this problem and is it a bug fixed in following version
of AMBER?

Thanks in advance. 

-- 
Sébastien Fiorucci
Université de Nice Sophia-Antipolis.
Laboratoire Arômes Synthèses Interactions
Faculté des Sciences
28, Avenue Valrose
F 06108 Nice Cedex 2. France
tel : 33/(0)4 92 07 27 10
fax : 33/(0)4 92 07 61 25
web: www.unice.fr/lasi
email : Sebastien.Fiorucci_at_unice.fr

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