AMBER Archive (2004)

Subject: Re: AMBER: Can xleap to handle homology model altogether X-ray structure?

From: Joachim Reichelt (Reichelt_at_gbf.de)
Date: Tue Nov 16 2004 - 11:42:02 CST

David A. Case schrieb:

>On Mon, Nov 15, 2004, Jack Lei wrote:
>
>
>>What I am studying now is based on a x-ray structure which are not complete
>>coordinates( they are not continued and there are loop regional
>>segment inside). And there are also homology model. I want to
>>combine both of X-ray structure and homology model to construct the
>>missed loop region.
>>
>>1. Can xleap do such thing?
>>
>>
>
>no.
>
>
>
>>2. Which tool could do such thing without changing x-ray structure and
>>could benefit from homology model if xleap could not?
>>
>>
>
>Try a google search with the phrase "homology model protein"
>
>
You may try BRAGI
http://bragi.gbf.de
It's free.

>...good luck...dac
>
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