AMBER Archive (2004)

Subject: Re: AMBER: Can xleap to handle homology model altogether X-ray structure?

From: David A. Case (case_at_scripps.edu)
Date: Tue Nov 16 2004 - 10:13:11 CST

On Mon, Nov 15, 2004, Jack Lei wrote:
>
> What I am studying now is based on a x-ray structure which are not complete
> coordinates( they are not continued and there are loop regional
> segment inside). And there are also homology model. I want to
> combine both of X-ray structure and homology model to construct the
> missed loop region.
>
> 1. Can xleap do such thing?

no.

> 2. Which tool could do such thing without changing x-ray structure and
> could benefit from homology model if xleap could not?

Try a google search with the phrase "homology model protein"

...good luck...dac

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