AMBER Archive (2004)

Subject: Re: AMBER: Setup for parallel computing

From: fangyu liang (fliang_at_usc.edu)
Date: Sat Jul 10 2004 - 18:10:19 CDT

Stef,

Thank you very much! Implementation is on its way.

Sincerely,

Fangyu
P.S. Meanwhile, I still would like to see more inputs from the Amber community. Thanks in advance.

----- Original Message -----
From: Stef <steletch_at_free.fr>
Date: Saturday, July 10, 2004 2:14 pm
Subject: Re: AMBER: Setup for parallel computing

> On ven, 2004-07-09 at 10:00 -0700, fangyu liang wrote:
> > Hi,
> >
> > I want to build a parallel PC computing system to run Amber 8. Please
> advise on which Linux program(RedHat, Suse, etc) is best for multiple CPUs
> run, how many PC CPUs is best for this kind of scheme, and what the setup
> steps are. Thank you very much!
> >
> > Sincerely,
> >
> > Fangyu
>
> You should consider CLIC from MandrakeSoft :
> http://clic.mandrakesoft.com/
>
> For hardware systems, in short, prefer opteron-based systems (the more
> cpu you can get on your motherboard, the best will performances be : a
> quadri cpu will be better than bi cpu), and very fast interconnecting
> system (infiniband ou 10Gbit/s system).
>
> Of course, as it is heavily depending on money, you can still use
> athlons and gigabit interconnection.
>
> One thing to never forget : warm is a danger, so pay attention to
> refresh properly your room.
>
> Stef
>
> --
> http://www.steletch.org
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>
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