AMBER Archive (2004)

Subject: RE: AMBER: question about Ptraj

From: Ross Walker (ross_at_rosswalker.co.uk)
Date: Thu Jul 08 2004 - 11:47:28 CDT


>From the amber mailing list archive:
http://amber.ch.ic.ac.uk/archive/200405/0335.html

All the best
Ross

/\
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|\oss Walker

| Department of Molecular Biology TPC15 |
| The Scripps Research Institute |
| Tel:- +1 858 784 8889 | EMail:- ross_at_rosswalker.co.uk |
| http://www.rosswalker.co.uk/ | PGP Key available on request |

> -----Original Message-----
> From: owner-amber_at_scripps.edu
> [mailto:owner-amber_at_scripps.edu] On Behalf Of jz7_at_duke.edu
> Sent: 08 July 2004 09:32
> To: amber_at_scripps.edu
> Subject: AMBER: question about Ptraj
>
> Dear all,
>
> I was trying to use Ptraj to do some essential dynamics
> calculation. But
> it turns out that I don't have the right version of ptraj (I am using
> Ptraj from Amber7). Because when I types the command:
>
> "matrix covar name mcovar", it gave me such warnings:
>
> WARNING in dispatchToken: Token string "matrix" not found in
> tokenlist
> WARNING in dispatchToken: Token string "covar" not found in tokenlist
> WARNING in dispatchToken: Token string "name" not found in tokenlist
> WARNING in dispatchToken: Token string "mcovar" not found in
> tokenlist
>
> I heard that a new version of Ptraj (come with Amber8) is
> needed. So I am
> wondering where can I find the new version of Ptraj? If
> possible, would
> anyone please send me a copy?
>
> Thanks a lot for your kind help!
>
> Best,
> Jeny
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