AMBER Archive (2004)

Subject: AMBER: question about Ptraj

From: jz7_at_duke.edu
Date: Thu Jul 08 2004 - 11:32:07 CDT

Dear all,

I was trying to use Ptraj to do some essential dynamics calculation. But
it turns out that I don't have the right version of ptraj (I am using
Ptraj from Amber7). Because when I types the command:

"matrix covar name mcovar", it gave me such warnings:

 WARNING in dispatchToken: Token string "matrix" not found in tokenlist
 WARNING in dispatchToken: Token string "covar" not found in tokenlist
 WARNING in dispatchToken: Token string "name" not found in tokenlist
 WARNING in dispatchToken: Token string "mcovar" not found in tokenlist

I heard that a new version of Ptraj (come with Amber8) is needed. So I am
wondering where can I find the new version of Ptraj? If possible, would
anyone please send me a copy?

Thanks a lot for your kind help!

Best,
Jeny
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