AMBER Archive (2004)

Subject: Re: AMBER: respgen

From: David A. Case (
Date: Wed Apr 07 2004 - 20:20:36 CDT

On Wed, Apr 07, 2004, Ilyas Yildirim wrote:
> While I was trying to understand antechamber step by step, I realized
> something. In page # 78 of the Amber Manual, there is an example for
> respgen. I think there is a misprint.

This (and other) errors in the Manual are described in the "updates to the
manual" section on the Amber web page (under Amber 7 manual; a similar update
page is there for the Amber 8 manual).

> Meanwhile, I think it might be useful to add the following command to this
> example before starting on it.
> antechamber -i sustiva.out -fi gout -o -fo ac

This is a good suggestion...thx...dac


================================================================== David A. Case | e-mail: Dept. of Molecular Biology, TPC15 | fax: +1-858-784-8896 The Scripps Research Institute | phone: +1-858-784-9768 10550 N. Torrey Pines Rd. | home page: La Jolla CA 92037 USA | ================================================================== ----------------------------------------------------------------------- The AMBER Mail Reflector To post, send mail to To unsubscribe, send "unsubscribe amber" to