AMBER Archive (2003)

Subject: Re: Problem in separating LES copies into different trajectory

From: Viktor Hornak (hornak_at_csb.sunysb.edu)
Date: Tue Jun 10 2003 - 10:50:36 CDT

Sameer P. Kawatkar wrote:
> Hi,
> I am using Moil-view 10.1 version to analyse LES-MD similation of a
> disaccharide in water. I have three copies of atoms which form phi and psi
> angle. While separating the copies into three different trajectories, I
> used command
> pick #mon 1 3 & #cop 0 1 done
>
> It separated first copy properly but for second copy I used
>
> pick #mon 1 3 & #cop 0 2 done
>

Sameer,

you nee to use "pick #mon 1 3 & # cop 2 2 done"

the numbers after "cop" simply mean the starting and ending number for
the copy...

hope this helps,
-viktor

> Although it created a trajectory but it counted first and second copy
> instead of just second copy.
> If I want to make all the copies into different trajectories, is there any
> way to do this whith moilview or any other technique?
> Please guide me in this regards.
>
> Sameer 

-- 
Viktor Hornak
SUNY at Stony Brook