AMBER Archive (2003)

Subject: Re: ambpdb

From: Luis Gracia (luis.gracia_at_mssm.edu)
Date: Tue Apr 15 2003 - 23:40:57 CDT

Hi!

May be you can try something like
ambpdb -p dor1.prmtop < dor1md2.restrt > md2.pdb

Youyi Peng wrote:
> Hi, Dear AMBER users:
> I want to convert restrt file to pdb file. After I typed the command, I
> got the following error message. I checked the prmtop and restrt files.
> Both are normal files. Could you tell me what is wrong and how to avoid
> it? Thanks.
>
> $ ambpdb -p dor1.prmtop
> | New format PARM file being parsed.
> | Version = 1.000 Date = 04/14/03 Time = 21:34:45
> dor1md2.restrt
> md2.pdb
> fmt: read unexpected character
> apparent state: internal I/O
> last format: (i6)
> lately reading sequential formatted internal IO
> Aborted
>
> Youyi Peng
>
>
>
>
> 

-- 
Luis Gracia, PhD
Dept. Physiology & Biophysics, 21-280
Mt Sinai School of Medicine
One Gustave L. Levy Place, New York NY 10029
Tel: (212) 241-0858   ---   Fax: (212) 860-3369
e.mail: luis.gracia_at_mssm.edu