AMBER Archive (2003)

Subject: problem with "Example 3" tutorials

From: S.Swaminathan (swamy_at_www.cdfd.org.in)
Date: Tue Mar 25 2003 - 16:39:23 CST

hi

I am working on AMBER tutorials. I am facing a problem in Example 3 when I
am trying to run sander by invoking (on Page 29 in the AMBER manual) :

sander -O -i gcg.in -p prmtop.gcg -c gcg_start.x -o gcg.out

(here gcg.in contains "Minimize water and ions" script.
 prmtop.gcg is obtained from Running tleap.)

I am getting the following error from the above program:

==========================================================================
Unit 10 Error on OPEN: refc can't close stderr: [1001] illegal unit number
logical unit 0, named 'stderr'
Abort (core dumped)

==========================================================================

how do i rectify this ? what is the reason for this ?

thanks
Swaminathan

======================================================
S.Swaminathan
Technical Officer - Bioinformatics
Centre for DNA Fingerprinting & Diagnostics (CDFD)
ECIL Road, Nacharam,
Hyderabad - 500 076
Tel: 27151344,346 Extn. 1207/1208
======================================================