AMBER Archive (2003)

Subject: compatibility of amber with NAMD

From: Ioana Cozmuta (ioana_at_nas.nasa.gov)
Date: Thu Feb 13 2003 - 12:42:41 CST

Dear Amber users,

I was wondering if anyone has any expertise in trying to use amber
generated files (topology especially) in NAMD. More specifically, is there
a way to use the .prmtop file as input for NAMD (so not to transform it
into a .psf file) if one also uses the amber force field in NAMD?

If this is not an option, does anyone know what is the simplest and
quickest way to "translate" the .prmtop file into a .psf file?

Thank you,
Ioana