AMBER Archive (2002)

Subject: RE: What's this "interface" the tutorial talks about?

From: priestle (priestle_at_selway.umt.edu)
Date: Wed Aug 28 2002 - 14:02:52 CDT

I think Andreas might be having the same problems that I posted a couple
of days ago. If he has AMBER7.0 then he won't have the interface code.

BTW Thanks (dac and dap) for your posts concerning interface in 5/6/7 :)
I didn't dig too deeply yet but I believe the problem I have with
Interface-5 is that it generates _extra_ namelist commands that
Sander-7.0 can't handle (nrun? etc).

Regards,

Nigel

Nigel D. Priestley, Ph.D.
Associate Professor of Chemistry
The University of Montana
Missoula, MT 59812-1656

phone : (406) 243 6251
FAX : (406) 243 4227
E-mail : priestle_at_selway.umt.edu
Web : http://biosynthesis.chem.umt.edu

-----Original Message-----
From: David Pearlman [mailto:dap_at_vpharm.com]
Sent: Wednesday, August 28, 2002 1:50 PM
To: Andreas Kerzmann
Cc: Amber mailing list
Subject: Re: What's this "interface" the tutorial talks about?

Interface is included in the Amber distribution. Go to
amber/src/interface. The readme file, 0README in that directory will
tell you how to compile and run Interface. Two extensive Interface
manuals, one devoted to the language, the other to the front end, are in
the amber/doc directory. (End users will only need to look at the
ambint.pdf manual, which is the front end).

dap

Andreas Kerzmann wrote:
>
> Hi all,
>
> I was wondering what the interface scripts most of the tutorials use
> are good for. I didn't find a program named interface or anything that

> could make use of such a script. Maybe I'm blind... Could you please
> help me?
>
> Thanks,
>
> Andreas Kerzmann.
>
> --
> Andreas Kerzmann phone
+49-681-302-64709
> Center for Bioinformatics fax
+49-681-302-64719
> anker_at_bioinf.uni-sb.de
http://www.cbi-saar.de