AMBER Archive (2002)

Subject: leaprc file (fwd)

From: amber_at_heimdal.compchem.ucsf.edu
Date: Mon Aug 26 2002 - 16:51:44 CDT

---------- Forwarded message ----------
Date: Sun, 25 Aug 2002 16:06:58 +0200
From: Vlad Cojocaru <Vlad.Cojocaru_at_mpi-bpc.mpg.de>
To: amber_at_heimdal.compchem.ucsf.EDU
Subject: leaprc file

Dear all,
  I have noticed a problem when specifying the leaprc file.
  If I want to load the leaprc.rna.ff99 it does not map the residues
according to the addPdbAtomMap command. Although all the names are
mapped with the command leap (from AMBER7) does not map them. Meanwhile
the leap of AMBER6 maps the residues if I specify the same addPdbAtomMap
command in the leaprc file.
  Does anyone have any ideea what might happen here?
Best wishes,
vlad 

-- 
Vlad Cojocaru 
Max Planck Institut for Biophysical Chemistry 
Deparment: 060 
Am Fassberg 11, 37077 Goettingen, Germany 
tel: ++49-551-201.1389 
e-mail: Vlad.Cojocaru_at_mpi-bpc.mpg.de