AMBER Archive (2002)

Subject: Memory and swap in sander

From: William Wei (william_at_phm.utoronto.ca)
Date: Mon Aug 12 2002 - 10:11:35 CDT

Hi, Amber funs, I run parallel sander on Onyx. A 16 processors and 8
processors parallel jobs and two other one processor minimization. They cost
about 28G swap, but only 3.0 G memory. In my computer I have totally 35G
memory, I want to use more of them to speed up my dynamics simulation. Can
anyone give ma a suggestion for how to modify the source file(s), and how
much memory should I create for the sander? Thanks, and have a good day.

-------------------------
William Wei
Faculty of Pharmacy
19 Russell Street
Toronto, ON. M5S 2S2
Tel: 1-416-946-8469
Fax: 1-416-978-8511
Email: william_at_phm.utoronto.ca
       william.wei_at_utoronto.ca