AMBER Archive (2002)

Subject: sander parallel

From: eric hu (erichu_linux_at_yahoo.com)
Date: Wed Jun 12 2002 - 16:11:24 CDT

Hi, I sucessfully complied mpi and amber on a linux
cluster. The tstmachines runs fine too (lists four
processors). However when I try to run mpirun -np 4
sander [options], it produces a file PI576 which has
the following lines:

###.##.##.###1 (host name1) 0 /home/user/** (running
file)
###.##.##.###2 (host name2) 1 /home/user/** (running
file)
###.##.##.###1 (host name1) 1 /home/user/** (running
file)
###.##.##.###2 (host name2) 1 /home/user/** (running
file)

The job is only running on one processor.

Eric

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