AMBER Archive (2001)

Subject: How to minimization of Average structure?

From: Xiaolin Chuang (xiaolin_chuang_at_hotmail.com)
Date: Sun Jun 03 2001 - 11:57:48 CDT

Dear Amber users,

I have just finished MD simulations of DNA using Amber 6 with standard
procedure. Now I have an average structure from trajectory file which the
average structrue was performed by ptraj module.

However, I don't know how to minimize this average structure. Could anyone
give me the input file of minimization? or please give me the suggestion.

Thank you very much in advance.

Xiaolin Chuang
_________________________________________________________________________
Get Your Private, Free E-mail from MSN Hotmail at http://www.hotmail.com.