AMBER Archive (2000)

Subject: Re: two questions: (1)dihedral, (2) movies

From: Frank Yan (siebenamber_at_hotmail.com)
Date: Tue Aug 15 2000 - 10:47:59 CDT

i highly recommend moil-view by carlos, it's a wonderful tool for analyzing
dynamics output and visualization... frank

>From: gail louise dempsey <gd2f_at_cms.mail.virginia.edu>
>To: amber_at_cgl.ucsf.edu
>Subject: two questions: (1)dihedral, (2) movies
>Date: Tue, 15 Aug 2000 10:49:28 -0400 (Eastern Daylight Time)
>
>1. Where do I specify improper dihedral parameters?
>Apparently this is what I need to do to keep sp2
>carbons planar and trans or cis.
>
>2. What visualization package is the best for viewing AMBER
>output? I would like to view the output as still-frames,
>or a movie. (I have been using MovieMol for some
>applications, but is there something that reads AMBER
>output directly?)
>
>- Gail
>

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