AMBER Archive (2000)

Subject: need help

From: nurindah wulandari (wulan_99_at_student.undip.ac.id)
Date: Tue Aug 15 2000 - 09:43:48 CDT

semarang,august 15th,2000

i am student on chemical dept. Diponegoro Univercity.
i have some question that i don't understand.

this is my question :
1. how is the effect of nucleophyle in dequarternary reaction ?
2. how steric effect ?

thanks for your information about that.
please+ send your reply to :
SUDPMIPA@semarang.wasantara.net.id
wulan_99@student.undip.ac.id
i will see your replay soon


nurindah wulandari

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From ???@??? Wed Aug 16 10:14:15 2000 Received: from doves.llnl.gov (doves.llnl.gov [128.115.17.203]) by popcorn.llnl.gov (8.8.8/LLNL-3.0.2/pop.llnl.gov-5.2) with ESMTP id IAA28776 for ; Tue, 15 Aug 2000 08:02:53 -0700 (PDT) Received: from pierce.llnl.gov (pierce.llnl.gov [128.115.41.100] (may be forged)) by doves.llnl.gov (8.9.3/LLNL-4.0) with ESMTP id IAA145617 for ; Tue, 15 Aug 2000 08:02:53 -0700 (PDT) Received: from giants.llnl.gov (giants.llnl.gov [128.115.249.1]) by pierce.llnl.gov (8.8.8/LLNL-3.0.2/llnl.gov-5.1) with ESMTP id IAA12759; Tue, 15 Aug 2000 08:02:53 -0700 (PDT) Received: from socrates.cgl.ucsf.edu (socrates.cgl.ucsf.edu [128.218.27.3]) by giants.llnl.gov (8.9.3/8.9.3/LLNL-Giants-4.1) with ESMTP id IAA13735; Tue, 15 Aug 2000 08:02:52 -0700 (PDT) Received: from cgl.ucsf.edu (cgl.ucsf.edu [128.218.27.20]) by socrates.cgl.ucsf.edu (8.9.3/8.9.3/GSC1.6) with ESMTP id HAA110811 for ; Tue, 15 Aug 2000 07:43:23 -0700 (PDT) Received: from mail.virginia.edu (mail.Virginia.EDU [128.143.2.9]) by cgl.ucsf.edu (8.9.3/8.9.3/GSC1.7) with SMTP id HAA78776 for ; Tue, 15 Aug 2000 07:43:22 -0700 (PDT) Received: from neon.mail.virginia.edu by mail.virginia.edu id aa24603; 15 Aug 2000 10:43 EDT Received: from gd2f95.virginia.edu (bootp-34-182.bootp.Virginia.EDU [128.143.34.182]) by neon.mail.Virginia.EDU (8.9.3/8.9.3) with SMTP id KAA00466 for ; Tue, 15 Aug 2000 10:42:08 -0400 (EDT) From: gail louise dempsey To: amber@cgl.ucsf.edu Subject: two questions: (1)dihedral, (2) movies Message-ID: Date: Tue, 15 Aug 2000 10:49:28 -0400 (Eastern Daylight Time) Priority: NORMAL X-Mailer: Simeon for Win32 Version 4.1.4 Build (40) X-Authentication: IMSP MIME-Version: 1.0 Content-Type: TEXT/PLAIN; CHARSET=US-ASCII X-UIDL: 5ffc5a0db6a1836c97d91f61c00943b8 1. Where do I specify improper dihedral parameters? Apparently this is what I need to do to keep sp2 carbons planar and trans or cis. 2. What visualization package is the best for viewing AMBER output? I would like to view the output as still-frames, or a movie. (I have been using MovieMol for some applications, but is there something that reads AMBER output directly?) - Gail