AMBER Archive (1999)

Subject: installing sander on T3E

From: cecilia clementi (cecilia_at_curio.ucsd.edu)
Date: Fri Dec 10 1999 - 19:47:28 CST

                                              Friday December 10, 1999
Dear all,

I'm trying to install "sander" code (version 4.1) on a Cray T3E machine.
Since there is not a specific MACHINE file for the t3e, I used the Machine.t3d
file replacing some lines (i.e. I substituted "setenv TARGET cray-t3d"
with "setenv TARGET cray-t3e", etc...).
But I did not manage to compile the program... when I try to compile it I
get the following message (just at the end of the compilation process):

 cld-404 cld: WARNING
   The symbol `WALL' referenced in relocatable object `dpsander.o:SANDER' is not
 defined.
 cld-404 cld: WARNING
   The symbol `NLSNLI' referenced in relocatable object `dpnmrred.o:NMRRED' is
 not defined.
 cld-404 cld: WARNING
   The symbol `AMFLSH' referenced in relocatable object `dpdynlib.o:PRNTMD' is
 not defined.
 cld-404 cld: WARNING
   The symbol `GETARG' referenced in relocatable object `mdfil.o:MDFIL' is not
 defined.
 cld-404 cld: WARNING
   The symbol `AMDATE' referenced in relocatable object `dpmdread.o:MDREAD' is
 not defined.
 cld-431 cld: WARNING
   The resulting output file `sander' is not executable because of previous
 WARNING messages.

I would really appreciate if you could please help me to understand what's
wrong and how I can fix it.
Thank you very much in advance.

Best regards,

                Cecilia Clementi

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        Dr. Cecilia Clementi
        Department of Physics
        University of California at San Diego
        9500 Gilman Drive, La Jolla, CA 92093-0319
        U.S.A.

        Room - Urey Hall 7222
        office phone +1-619-534-7337
               fax +1-619-534-7697
        e-mail: cecilia_at_curio.ucsd.edu
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