AMBER Archive (2009)

Subject: Re: [AMBER] Custom RNA modeling

From: Thomas Cheatham (
Date: Mon Dec 14 2009 - 12:35:44 CST

> Just to rephrase and clarify this issue. I am looking to produce a
> few page
> simple instruction manual on RNA modeling and mechanics in AMBER. I
> know
> AMBER is very large and complex and this is a tough task but I want
> to see
> if it's possible. I am fairly new to AMBER and I have read through
> the
> user's manuals for AMBER 10 and AMBERTools and have found a few simple
> commands, one of which I

Just for this we have tutorials available... See the links at and I suggest the first DNA tutorial modified/updated by
Ross Walker. If the person does not know Unix, then also do a unix
tutorial (google unix tutorial) and learn how to use an editor. For
RNA you are best off starting from experimental structure...

AMBER mailing list