AMBER Archive (2009)

Subject: Re: [AMBER] Custom RNA modeling

From: Wallace Kunin (kunin_at_marshall.edu)
Date: Mon Dec 14 2009 - 11:50:25 CST

Just to rephrase and clarify this issue. I am looking to produce a few page
simple instruction manual on RNA modeling and mechanics in AMBER. I know
AMBER is very large and complex and this is a tough task but I want to see
if it's possible. I am fairly new to AMBER and I have read through the
user's manuals for AMBER 10 and AMBERTools and have found a few simple
commands, one of which I mentioned in my first message but I don't know
where to really get going. The person I am writing this for is not very
good at programming so simplicity is key as far as is possible. I thought
the tRNA might be a good start but the method suggested so far using MCSYM
seems far too difficult for the person I'm writing for to understand in any
reasonable amount of time.
_______________________________________________
AMBER mailing list
AMBER_at_ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber