AMBER Archive (2009)

Subject: Re: [AMBER] retinal lib file, params?

From: Simon Becker (
Date: Mon Nov 02 2009 - 02:34:14 CST

hi mark,

i only know this one:

though no retinal, sorry.


Mark M Huntress schrieb:
> Hi,
> I am modeling with MD an unbound retinal in the center of a protein, and it need a lib file for it, and I kind of remember seeing a long time ago a page where people could share parameter files for non-standard residues, but I can't find it again. I figure that someone out there somewhere must have a lib file for retinal. If anyone has parameters for retinal unbound (with CH=O) I would really appreciate it, or if anyone can direct me to that site where files are shared.
> Thanks
> Mark
> _______________________________________________
> AMBER mailing list

Simon Becker
Dept. of Biology
Molecular Bioinformatics
Box M647 
Universitaet Konstanz
D-78457 Konstanz 

mail: Tel: 0049 7531 882900, Fax: 3183

_______________________________________________ AMBER mailing list