AMBER Archive (2009)

Subject: [AMBER] retinal lib file, params?

From: Mark M Huntress (
Date: Sun Nov 01 2009 - 11:59:34 CST


   I am modeling with MD an unbound retinal in the center of a protein, and it need a lib file for it, and I kind of remember seeing a long time ago a page where people could share parameter files for non-standard residues, but I can't find it again. I figure that someone out there somewhere must have a lib file for retinal. If anyone has parameters for retinal unbound (with CH=O) I would really appreciate it, or if anyone can direct me to that site where files are shared.

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