AMBER Archive (2009)
Subject: Re: [AMBER] ambpdb problem
From: Jordan Monnet (monnet.jordan_at_free.fr)
> 1) is there any option to get charges on the atoms as the structure so seen donot have
You might want pqr instead of pdb?
ambpdb -pqr -p prmtop < rst > whatever.pqr
You will have charges and it really looks like a pdb file...