AMBER Archive (2009)

Subject: [AMBER] ambpdb problem

From: Jio M (
Date: Thu Jul 30 2009 - 14:12:10 CDT

dear AMBER users,

I used ambpdb to create pdb file as ;

-p .prmtop < .rst > .pdb

1) is there any option to get  charges on  the atoms as the structure so seen donot have

any charges... i.e. the pdb formatt. can the prmtop file be used to generate the charges

2) the pdb I am getting donot show bonds in xleap visualiser...but its ok in VMD



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