AMBER Archive (2009)
Subject: Re: [AMBER] ptraj questions
From: Jia Xu (xujia.ruc_at_gmail.com)
Date: Sun May 24 2009 - 00:06:10 CDT
Dear Myunggi Yi,
I have solved that problem after read the manual. Thank you for your
On Fri, May 22, 2009 at 9:57 PM, Myunggi Yi <myunggi_at_gmail.com> wrote:
> Read manual of 'ptraj' part.
> When you read the trajectory, read only every 500 ps snapshots.
> Another way is using VMD.
> After reading if you don't get it, then post your problem again with
> Good luck.
> On Wed, May 20, 2009 at 10:39 AM, Jia Xu <xujia.ruc_at_gmail.com> wrote:
> > Dear Amber users,
> > I have a 60 nanoseconds trajectory, and I want to generate 120
> > PDB-format frames from the trajectory every 0.5 ns. However, I donít know
> > how to do that. Could anyone help me out?
> > Thanks in advance!
> > --
> > Jia Xu
> > _______________________________________________
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> > AMBER_at_ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> Best wishes,
> Myunggi Yi
> KLB 419
> Institute of Molecular Biophysics
> Florida State University
> Tallahassee, FL 32306
> Office: (850) 645-1334
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