AMBER Archive (2009)

Subject: Re: [AMBER] ptraj questions

From: Jia Xu (xujia.ruc_at_gmail.com)
Date: Sun May 24 2009 - 00:06:10 CDT


Dear Myunggi Yi,
    I have solved that problem after read the manual. Thank you for your
advice.

On Fri, May 22, 2009 at 9:57 PM, Myunggi Yi <myunggi_at_gmail.com> wrote:

> Hi,
>
> Read manual of 'ptraj' part.
>
> When you read the trajectory, read only every 500 ps snapshots.
>
> Another way is using VMD.
>
> After reading if you don't get it, then post your problem again with
> detail.
>
> Good luck.
>
>
> On Wed, May 20, 2009 at 10:39 AM, Jia Xu <xujia.ruc_at_gmail.com> wrote:
>
> > Dear Amber users,
> >
> > I have a 60 nanoseconds trajectory, and I want to generate 120
> > PDB-format frames from the trajectory every 0.5 ns. However, I donít know
> > how to do that. Could anyone help me out?
> >
> > Thanks in advance!
> >
> >
> >
> >
> >
> > --
> > Jia Xu
> > _______________________________________________
> > AMBER mailing list
> > AMBER_at_ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
> --
> Best wishes,
>
> Myunggi Yi
> ==================================
> KLB 419
> Institute of Molecular Biophysics
> Florida State University
> Tallahassee, FL 32306
>
> Office: (850) 645-1334
>
> http://sites.google.com/site/myunggi/
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-- 
Jia Xu
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