AMBER Archive (2009)

Subject: Re: [AMBER] ptraj questions

From: Myunggi Yi (myunggi_at_gmail.com)
Date: Fri May 22 2009 - 08:57:08 CDT


Hi,

Read manual of 'ptraj' part.

When you read the trajectory, read only every 500 ps snapshots.

Another way is using VMD.

After reading if you don't get it, then post your problem again with detail.

Good luck.

On Wed, May 20, 2009 at 10:39 AM, Jia Xu <xujia.ruc_at_gmail.com> wrote:

> Dear Amber users,
>
> I have a 60 nanoseconds trajectory, and I want to generate 120
> PDB-format frames from the trajectory every 0.5 ns. However, I donít know
> how to do that. Could anyone help me out?
>
> Thanks in advance!
>
>
>
>
>
> --
> Jia Xu
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> AMBER_at_ambermd.org
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>

-- 
Best wishes,

Myunggi Yi ================================== KLB 419 Institute of Molecular Biophysics Florida State University Tallahassee, FL 32306

Office: (850) 645-1334

http://sites.google.com/site/myunggi/ _______________________________________________ AMBER mailing list AMBER_at_ambermd.org http://lists.ambermd.org/mailman/listinfo/amber