AMBER Archive (2004)

Subject: AMBER: distance between images

From: riccardo nifosi (r.nifosi_at_nest.sns.it)
Date: Thu Oct 14 2004 - 09:56:40 CDT

Dear Amber community,

is there any routine to calculate the minimum distance between two images of
the solute during an MD trajectory? I'm using a truncated octahedron box, and
would like to check whether the protein in the box is interacting with its
image(s).

Thanks,
Riccardo 

-- 
----------------------------------------------------
Riccardo Nifosė
NEST-INFM
Scuola Normale Superiore
Piazza dei Cavalieri n. 7
56126 Pisa (IT)

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