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AMBER Archive (2004) - By Thread
Most recent messages4314 messages sorted by: [ author ] [ date ] [ subject ]
About this archive
Starting: Thu Jan 01 2004 - 04:51:48 CST
Ending: Thu May 05 2005 - 14:26:38 CDT
- Re: AMBER: Antechamber & Ptraj/Rdparm L Jin (Thu Jan 01 2004 - 04:47:18 CST)
- Re: AMBER: Antechamber & Ptraj/Rdparm zhaoxc_at_puccini.che.pitt.edu (Thu Jan 01 2004 - 09:05:31 CST)
- Re: AMBER: Antechamber & Ptraj/Rdparm Bill Ross (Thu Jan 01 2004 - 16:26:55 CST)
- AMBER: Molecular Frame Byungchan Kim (Thu Jan 01 2004 - 21:46:14 CST)
- Re: AMBER: Molecular Frame David A. Case (Fri Jan 02 2004 - 10:22:10 CST)
- Re: AMBER: Molecular Frame Byungchan Kim (Fri Jan 02 2004 - 17:03:36 CST)
- Re: AMBER: Molecular Frame David A. Case (Sat Jan 03 2004 - 09:51:13 CST)
- Re: AMBER: Molecular Frame Bill Ross (Fri Jan 02 2004 - 17:40:54 CST)
- Re: AMBER: Molecular Frame Byungchan Kim (Sat Jan 03 2004 - 13:00:20 CST)
- AMBER: Molecular Frame Byungchan Kim (Thu Jan 01 2004 - 21:46:14 CST)
- AMBER: algorithm used in AMBER A. Hungie (Fri Jan 02 2004 - 04:07:11 CST)
- AMBER: force field A. Hungie (Fri Jan 02 2004 - 06:28:59 CST)
- AMBER: rms in ptraj L Jin (Mon Jan 05 2004 - 08:49:47 CST)
- AMBER: File format generated by respgen Lishan Yao (Mon Jan 05 2004 - 10:50:38 CST)
- AMBER: prep file Youyi Peng (Mon Jan 05 2004 - 17:40:07 CST)
- Re: AMBER: prep file Bill Ross (Mon Jan 05 2004 - 17:49:14 CST)
- AMBER: Radius of gyration Bimo Ario Tejo (Tue Jan 06 2004 - 00:14:37 CST)
- AMBER: Parameters for deuterium Charlie Laughton (Tue Jan 06 2004 - 09:17:46 CST)
- AMBER: Intel Fortran Compiler 8.0 / pmemd 3.1 warning Robert Duke (Tue Jan 06 2004 - 14:20:44 CST)
- Re: AMBER: Intel Fortran Compiler 8.0 / pmemd 3.1 warning Andreas Svrcek-Seiler (Wed Jan 07 2004 - 06:12:30 CST)
- AMBER: Atom type L Jin (Wed Jan 07 2004 - 05:26:25 CST)
- AMBER: strange output of MD L Jin (Wed Jan 07 2004 - 10:42:49 CST)
- Re: AMBER: strange output of MD Rhonda Torres (Wed Jan 07 2004 - 11:48:54 CST)
- Re: AMBER: Atom type Rhonda Torres (Wed Jan 07 2004 - 12:09:17 CST)
- AMBER: .crg file for Delphi a b (Wed Jan 07 2004 - 12:22:34 CST)
- AMBER: modeling GPCR in lipid environment Giulio Rastelli (Thu Jan 08 2004 - 10:49:53 CST)
- AMBER: Minimiation (AMBER5/AMBER7) does not reach the tageted rmsd Anna Schrey (Thu Jan 08 2004 - 04:30:37 CST)
- AMBER: Vlimit problem Yuqin Cai (Thu Jan 08 2004 - 12:15:38 CST)
- AMBER: running on Itanium machines northrop_at_chem.ucla.edu (Thu Jan 08 2004 - 13:14:52 CST)
- AMBER: Amber compilation in IBM-SP4 Jiten (Sat Jan 10 2004 - 02:28:12 CST)
- AMBER: references? a b (Sun Jan 11 2004 - 08:40:50 CST)
- AMBER: Improper dihedral Herbert Georg (Mon Jan 12 2004 - 08:23:22 CST)
- Re: AMBER: Improper dihedral Bill Ross (Mon Jan 12 2004 - 12:21:03 CST)
- AMBER: disulfide bonds Wen Li (Mon Jan 12 2004 - 15:56:26 CST)
- AMBER: error in minimization Itziar Maestre Asenjo (Tue Jan 13 2004 - 09:12:22 CST)
- Re: AMBER: charris5 (Tue Jan 13 2004 - 13:07:33 CST)
- AMBER: LEAP - Error loading units Miguel de Federico (Wed Jan 14 2004 - 11:12:29 CST)
- AMBER: DMF box Stefano.Pieraccini_at_unimi.it (Wed Jan 14 2004 - 10:42:02 CST)
- Re: AMBER: LEAP - Error loading units Bill Ross (Wed Jan 14 2004 - 13:45:19 CST)
- AMBER: "ATTN, need revision" klamothe_at_uiuc.edu (Wed Jan 14 2004 - 14:07:56 CST)
- AMBER: free energy profile calculation Martina Roeselova (Wed Jan 14 2004 - 15:14:48 CST)
- AMBER: NTF L Jin (Fri Jan 16 2004 - 05:15:16 CST)
- AMBER: atom type CM Kristina Furse (Fri Jan 16 2004 - 14:37:38 CST)
- Re: AMBER: atom type CM Bill Ross (Fri Jan 16 2004 - 15:17:29 CST)
- AMBER: GB and Atom Type Steve Seibold (Tue Jan 20 2004 - 09:34:45 CST)
- AMBER: Question for PMEMD users Robert Duke (Tue Jan 20 2004 - 10:05:38 CST)
- AMBER: restraint tang kwa (Tue Jan 20 2004 - 10:10:39 CST)
- AMBER: Parm98 Vs 02 A.Madhumalar (Tue Jan 20 2004 - 10:27:03 CST)
- AMBER: PDB files Beale, John (Tue Jan 20 2004 - 10:43:36 CST)
- AMBER: Do I need to repeat MD simulation? aini_at_UMDNJ.EDU (Tue Jan 20 2004 - 17:43:00 CST)
- AMBER: segmentation fault in Leap Ioana Cozmuta (Tue Jan 20 2004 - 22:39:28 CST)
- Re: AMBER: segmentation fault in Leap Bill Ross (Wed Jan 21 2004 - 03:47:58 CST)
- AMBER: Errors in MM-PBSA??? ML (Wed Jan 21 2004 - 05:46:35 CST)
- AMBER: NMODE via MM-PBSA ML (Wed Jan 21 2004 - 06:03:31 CST)
- AMBER: antechamber and mopac5010mn S. Frank Yan (Wed Jan 21 2004 - 09:37:25 CST)
- AMBER: crystal lattice determination Scott Brozell (Wed Jan 21 2004 - 10:51:37 CST)
- AMBER: oxs g5 machine file Knut Langsetmo (Wed Jan 21 2004 - 14:10:33 CST)
- AMBER: crosslink a residue with a small molecule Eric Hu (Wed Jan 21 2004 - 15:41:08 CST)
- AMBER: prep file for zinc finger Wen Li (Wed Jan 21 2004 - 16:02:54 CST)
- AMBER: remove rotational motion Itziar Maestre Asenjo (Thu Jan 22 2004 - 01:39:15 CST)
- AMBER: How does LEaP place Na+ ions? tang kwa (Thu Jan 22 2004 - 04:10:16 CST)
- AMBER: restrt L Jin (Thu Jan 22 2004 - 05:03:51 CST)
- Re: AMBER: How does LEaP place Na+ ions? Bill Ross (Thu Jan 22 2004 - 11:12:07 CST)
- AMBER: Segmentation fault (core dumped) error of antechamber program S. Frank Yan (Thu Jan 22 2004 - 13:36:54 CST)
- AMBER: oxygen positions around a DNA Ioana Cozmuta (Thu Jan 22 2004 - 20:19:51 CST)
- AMBER: Problem using GLYCAM with sander Itziar Maestre Asenjo (Fri Jan 23 2004 - 11:05:52 CST)
- AMBER: Which program to use to visualize the RESP Outputs derived by AMBER 7 Ilyas Yildirim (Fri Jan 23 2004 - 12:18:23 CST)
- Re: AMBER: Which program to use to visualize the RESP Outputs derived by AMBER 7 Bill Ross (Fri Jan 23 2004 - 13:26:15 CST)
- AMBER: phosphothreonine Youyi Peng (Fri Jan 23 2004 - 16:57:06 CST)
- AMBER: how to correctly change frcmod? opitz_at_che.udel.edu (Fri Jan 23 2004 - 17:05:38 CST)
- AMBER: Fwd: NVE & polarizable force field] Martina Roeselova (Fri Jan 23 2004 - 20:16:32 CST)
- AMBER: Memory for AMBER 6 simulation Sergey (Sat Jan 24 2004 - 03:22:56 CST)
- AMBER: NTR force constant for restraint !! Jiten (Sun Jan 25 2004 - 01:37:09 CST)
- AMBER: Cartitian Restraint Error Jiten (Sun Jan 25 2004 - 08:17:11 CST)
- Re: AMBER: Cartitian Restraint Error Bill Ross (Sun Jan 25 2004 - 13:39:58 CST)
- AMBER: mopac.sh Beale, John (Mon Jan 26 2004 - 08:31:46 CST)
- AMBER: B factors from simulation and from cryst Vlad Cojocaru (Mon Jan 26 2004 - 10:21:50 CST)
- AMBER: B factors --- one more explanation Vlad Cojocaru (Mon Jan 26 2004 - 10:25:47 CST)
- AMBER: installation test question (antechamber, ash) Charles F. Fisher (Mon Jan 26 2004 - 12:16:30 CST)
- AMBER: Suse AMD64 cluster installation Fang, Jianwen (Mon Jan 26 2004 - 12:49:54 CST)
- AMBER: ambpdb in AMBER7 Hong Wu (Mon Jan 26 2004 - 12:52:10 CST)
- Re: AMBER: ambpdb in AMBER7 Bill Ross (Mon Jan 26 2004 - 16:40:12 CST)
- AMBER: Lattice structures in xleap Brandon Tefft (Mon Jan 26 2004 - 23:11:46 CST)
- Re: AMBER: Lattice structures in xleap Bill Ross (Tue Jan 27 2004 - 01:52:38 CST)
- AMBER: trajectory file corruption John (Tue Jan 27 2004 - 05:11:54 CST)
- Re: AMBER: Which program to use to visualize the RESP Outputs FyD (Tue Jan 27 2004 - 10:59:51 CST)
- Re: AMBER: A few questions in the protein unfolding simulations using GB model Bill Ross (Tue Jan 27 2004 - 15:19:10 CST)
- AMBER: A few questions in the protein unfolding simulations using GB model Jiayun Pang (Tue Jan 27 2004 - 14:33:15 CST)
- Re: AMBER: A few questions in the protein unfolding simulations using GB model Bill Ross (Wed Jan 28 2004 - 12:21:10 CST)
- Re: AMBER: A few questions in the protein unfolding simulations using GB model Carlos Simmerling (Wed Jan 28 2004 - 12:26:31 CST)
- Re: AMBER: A few questions in the protein unfolding simulations using GB model Jiayun Pang (Thu Jan 29 2004 - 04:47:52 CST)
- Re: AMBER: A few questions in the protein unfolding simulations using GB model Andy Purkiss (Thu Jan 29 2004 - 08:19:22 CST)
- Re: AMBER: A few questions in the protein unfolding simulations using GB model David A. Case (Thu Jan 29 2004 - 21:59:24 CST)
- Re: AMBER: A few questions in the protein unfolding simulations using GB model Carlos Simmerling (Wed Jan 28 2004 - 12:26:31 CST)
- RE: AMBER: A few questions in the protein unfolding simulations using GB model Bill Ross (Wed Jan 28 2004 - 12:22:55 CST)
- Re: AMBER: A few questions in the protein unfolding simulations using GB model Bill Ross (Wed Jan 28 2004 - 12:21:10 CST)
- AMBER: compilation under fedora core 1 Carsten Detering (Tue Jan 27 2004 - 12:51:26 CST)
- AMBER: SANDER - Abnormal high velocities Miguel de Federico (Wed Jan 28 2004 - 05:16:45 CST)
- AMBER: Normal modes of protein-ligand Martin Lepsik (Wed Jan 28 2004 - 07:43:12 CST)
- AMBER: LES question Lishan Yao (Wed Jan 28 2004 - 12:52:58 CST)
- Re: AMBER: Ibelly and Ewald error message when ewald should be off Scott Brozell (Wed Jan 28 2004 - 23:57:06 CST)
- AMBER: sander and mpich Thomas Exner (Thu Jan 29 2004 - 02:26:55 CST)
- AMBER: CYS, CYX and CYM Nikolai Smolin (Thu Jan 29 2004 - 03:56:09 CST)
- AMBER: ANAL problem. A.B.S.M Osman gani (Thu Jan 29 2004 - 06:24:19 CST)
- AMBER: conversion of amber trajectories to gromos /(xtc) Karin Schleinkofer (Thu Jan 29 2004 - 07:10:28 CST)
- AMBER: XLEAP L Jin (Thu Jan 29 2004 - 08:40:28 CST)
- AMBER: question about LES simulation Vlad Cojocaru (Thu Jan 29 2004 - 10:43:25 CST)
- AMBER: Moil View on Linux Vlad Cojocaru (Thu Jan 29 2004 - 11:13:57 CST)
- AMBER: LES Simulations Vlad Cojocaru (Thu Jan 29 2004 - 11:18:14 CST)
- AMBER: LES error Vlad Cojocaru (Thu Jan 29 2004 - 14:49:49 CST)
- AMBER: (No subject) opitz_at_che.udel.edu (Thu Jan 29 2004 - 16:09:47 CST)
- AMBER: test Vlad Cojocaru (Fri Jan 30 2004 - 07:39:14 CST)
- Re: AMBER: sander and mpich (which compilers/mpich work) Jerry Grooms (Fri Jan 30 2004 - 17:00:22 CST)
- Re: AMBER: sander and mpich (which compilers/mpich work) Carlos Simmerling (Fri Jan 30 2004 - 17:09:09 CST)
- Re: AMBER: sander and mpich (which compilers/mpich work) Viktor Hornak (Fri Jan 30 2004 - 19:23:21 CST)
- AMBER: sander.LES on IBM SP cluster Vlad Cojocaru (Sat Jan 31 2004 - 04:40:56 CST)
- Re: AMBER: sander.LES on IBM SP cluster Carlos Simmerling (Sat Jan 31 2004 - 08:27:30 CST)
- Re: AMBER: sander.LES on IBM SP cluster Vlad Cojocaru (Sat Jan 31 2004 - 11:18:56 CST)
- AMBER: Installing Amber on IBM AIX cluster Vlad Cojocaru (Sat Jan 31 2004 - 12:50:30 CST)
- AMBER: Installing Amber on IBM AIX cluster Wayne Dawson (Tue Feb 03 2004 - 00:11:49 CST)
- Re: AMBER: sander.LES on IBM SP cluster David A. Case (Sat Jan 31 2004 - 13:02:01 CST)
- AMBER: AMBER on IBM SP cluster Vlad Cojocaru (Sat Jan 31 2004 - 13:07:29 CST)
- Re: AMBER: sander.LES on IBM SP cluster Carlos Simmerling (Sat Jan 31 2004 - 13:07:50 CST)
- Re: AMBER: sander.LES on IBM SP cluster Vlad Cojocaru (Sat Jan 31 2004 - 13:20:56 CST)
- Re: AMBER: sander.LES on IBM SP cluster Carlos Simmerling (Sat Jan 31 2004 - 13:29:23 CST)
- Re: AMBER: sander.LES on IBM SP cluster Vlad Cojocaru (Sat Jan 31 2004 - 11:18:56 CST)
- Re: AMBER: sander.LES on IBM SP cluster Carlos Simmerling (Sat Jan 31 2004 - 08:27:30 CST)
- AMBER: Unknown Amber Nomeclature Andrew M K Law (Sat Jan 31 2004 - 16:17:47 CST)
- AMBER: DNA Beale, John (Mon Feb 02 2004 - 07:31:51 CST)
- AMBER: convert restart to mdcrd? Karin Schleinkofer (Mon Feb 02 2004 - 08:39:40 CST)
- AMBER: ptraj & LES Vlad Cojocaru (Mon Feb 02 2004 - 10:46:08 CST)
- AMBER: LEaP- Error reading frcmod parameters. Miguel de Federico (Mon Feb 02 2004 - 12:03:00 CST)
- Re: AMBER: NVE&polarizable force field Martina Roeselova (Mon Feb 02 2004 - 11:33:17 CST)
- AMBER: TI, angle parameters for nitrogen, frcmod Carsten Detering (Mon Feb 02 2004 - 14:38:59 CST)
- AMBER: nucleic acid bases nonplanar during LES sim Vlad Cojocaru (Mon Feb 02 2004 - 15:17:09 CST)
- Re: AMBER: nucleic acid bases nonplanar during LES sim Carlos Simmerling (Mon Feb 02 2004 - 15:56:00 CST)
- AMBER: temperature in DelPhi for MM-PBSA calculation Qing Zhang (Mon Feb 02 2004 - 16:54:05 CST)
- RE: AMBER: temperature in DelPhi for MM-PBSA calculation S. Frank Yan (Mon Feb 02 2004 - 17:18:22 CST)
- RE: AMBER: temperature in DelPhi for MM-PBSA calculation Qing Zhang (Mon Feb 02 2004 - 18:58:54 CST)
- Re: AMBER: temperature in DelPhi for MM-PBSA calculation rluo_at_uci.edu (Mon Feb 02 2004 - 20:45:52 CST)
- AMBER: temperature in DelPhi for MM-PBSA calculation Qing Zhang (Mon Feb 02 2004 - 16:54:05 CST)
- Re: AMBER: nucleic acid bases nonplanar during LES sim Carlos Simmerling (Mon Feb 02 2004 - 15:56:00 CST)
- AMBER: leap - orientation of sequenced residues Sarah Wittkopp (Mon Feb 02 2004 - 19:58:33 CST)
- AMBER: xleap & antechamber L Jin (Tue Feb 03 2004 - 03:46:54 CST)
- AMBER: protonation Nikolai Smolin (Tue Feb 03 2004 - 03:50:23 CST)
- AMBER: the uses for Amber FFs a b (Tue Feb 03 2004 - 08:48:24 CST)
- AMBER: What does this error message mean? nie beining (Tue Feb 03 2004 - 09:58:41 CST)
- AMBER: Carnal Herbert Georg (Tue Feb 03 2004 - 10:11:28 CST)
- Re: AMBER: Carnal Bill Ross (Tue Feb 03 2004 - 12:14:02 CST)
- AMBER: Amber on Redhat Enterprise Mingfeng Yang (Tue Feb 03 2004 - 12:23:44 CST)
- Re: AMBER: What does this error message mean? Bill Ross (Tue Feb 03 2004 - 12:40:15 CST)
- AMBER: A general question aini_at_UMDNJ.EDU (Tue Feb 03 2004 - 17:49:06 CST)
- AMBER: rstdip Martina Roeselova (Wed Feb 04 2004 - 11:57:18 CST)
- AMBER: carnal Herbert Georg (Wed Feb 04 2004 - 13:18:37 CST)
- AMBER: Re: ANAL problem A.B.S.M Osman gani (Wed Feb 04 2004 - 13:31:18 CST)
- Re: AMBER: carnal Bill Ross (Wed Feb 04 2004 - 13:40:31 CST)
- AMBER: antechamber + mopac error Carsten Detering (Wed Feb 04 2004 - 20:57:48 CST)
- AMBER: ptraj Julien Pecher (Thu Feb 05 2004 - 02:46:09 CST)
- Re: AMBER: ptraj Bill Ross (Thu Feb 05 2004 - 03:43:59 CST)
- AMBER: PMEMD and nmropt=1 aldo jongejan (Thu Feb 05 2004 - 05:52:29 CST)
- AMBER: antechamber error in test / differences in prmtop files Carsten Detering (Thu Feb 05 2004 - 14:07:07 CST)
- AMBER: ptraj and dipoles Herbert Georg (Thu Feb 05 2004 - 15:40:24 CST)
- AMBER: MCSS Chen, Ya (Thu Feb 05 2004 - 22:33:48 CST)
- AMBER: AMBER 5 (sander) Parallel PME on IBM p630 uddhavesh bhaskar sonavane (Fri Feb 06 2004 - 02:01:24 CST)
- AMBER: water as a "ligand" in GBSA and MM-PBSA? Giulio Rastelli (Fri Feb 06 2004 - 11:41:50 CST)
- AMBER: How to remove Cl- ions Do Anh Tuan (Fri Feb 06 2004 - 07:24:10 CST)
- Re: AMBER: How to remove Cl- ions Bill Ross (Fri Feb 06 2004 - 10:35:27 CST)
- AMBER: off-subject ROCKS/Qbank James W. Caldwell (Fri Feb 06 2004 - 14:03:09 CST)
- Fwd: Re: AMBER: Lattice structures in xleap Brandon Tefft (Fri Feb 06 2004 - 15:27:50 CST)
- AMBER: antechamber + mopac +scf failed Carsten Detering (Fri Feb 06 2004 - 18:11:22 CST)
- AMBER: antechamber + mopac + MAXIMUM NUMBER OF ATOMIC ORBITALS EXCEEDED Carsten Detering (Fri Feb 06 2004 - 19:50:46 CST)
- AMBER: adding ions to nucleic acids a b (Sun Feb 08 2004 - 04:47:19 CST)
- AMBER: question about the average structure from ptraj aini_at_UMDNJ.EDU (Sun Feb 08 2004 - 13:33:23 CST)
- Re: AMBER: adding ions to nucleic acids Bill Ross (Sun Feb 08 2004 - 13:40:50 CST)
- Re: AMBER: question about the average structure from ptraj Bill Ross (Sun Feb 08 2004 - 13:47:11 CST)
- AMBER: dipole moment in ptraj Herbert Georg (Sun Feb 08 2004 - 12:42:07 CST)
- AMBER: Aldo's PMEMD bug Robert Duke (Mon Feb 09 2004 - 07:53:43 CST)
- AMBER: antechamber error jwfang (Mon Feb 09 2004 - 09:50:17 CST)
- AMBER: antechamber + FAILED TO ACHIEVE SCF Carsten Detering (Mon Feb 09 2004 - 13:17:41 CST)
- AMBER: Nmode convergence ML (Tue Feb 10 2004 - 01:36:27 CST)
- AMBER: Temperature in Nmode ML (Tue Feb 10 2004 - 09:25:12 CST)
- AMBER: minimization output L Jin (Tue Feb 10 2004 - 10:36:25 CST)
- AMBER: LES question Lishan Yao (Tue Feb 10 2004 - 14:47:20 CST)
- Re: AMBER: LES question Vlad Cojocaru (Tue Feb 10 2004 - 15:01:12 CST)
- Re: AMBER: LES question Lishan Yao (Tue Feb 10 2004 - 15:02:18 CST)
- Re: AMBER: LES question xiaolin cheng (Tue Feb 10 2004 - 18:14:31 CST)
- Re: AMBER: LES question Carlos Simmerling (Wed Feb 11 2004 - 07:48:48 CST)
- Re: AMBER: LES question Lishan Yao (Wed Feb 11 2004 - 08:16:01 CST)
- Re: AMBER: LES question Carlos Simmerling (Wed Feb 11 2004 - 11:55:27 CST)
- Re: AMBER: LES question Lishan Yao (Wed Feb 11 2004 - 13:20:54 CST)
- Re: AMBER: LES question Carlos Simmerling (Wed Feb 11 2004 - 13:43:58 CST)
- Re: AMBER: LES question Lishan Yao (Wed Feb 11 2004 - 13:52:09 CST)
- Re: AMBER: LES question Carlos Simmerling (Wed Feb 11 2004 - 14:03:44 CST)
- Re: AMBER: LES question Lishan Yao (Thu Feb 12 2004 - 07:59:02 CST)
- Re: AMBER: LES question Lishan Yao (Tue Feb 10 2004 - 15:02:18 CST)
- Re: AMBER: LES question Vlad Cojocaru (Tue Feb 10 2004 - 15:01:12 CST)
- AMBER: Nitrogen vdw type Terry Downing (Tue Feb 10 2004 - 16:56:37 CST)
- AMBER: Installing AMBER on SGI Octane 2-CPU - erfcfun.c compile prob. Joseph E. Maxwell (Tue Feb 10 2004 - 17:36:26 CST)
- AMBER: Box of mixed solvant FyD (Tue Feb 10 2004 - 22:18:42 CST)
- AMBER: atom type for GBSA aini_at_UMDNJ.EDU (Wed Feb 11 2004 - 09:13:04 CST)
- AMBER: GBSA frequency update Sergio E. Wong (Wed Feb 11 2004 - 17:29:10 CST)
- AMBER: Run calculations for protein in Amber Małgorzata Jarończyk (Thu Feb 12 2004 - 03:18:20 CST)
- AMBER: ptraj Karin Schleinkofer (Thu Feb 12 2004 - 04:57:47 CST)
- Re: AMBER: Run calculations for protein in Amber-distance dependent dielectric function Małgorzata Jarończyk (Thu Feb 12 2004 - 08:28:59 CST)
- AMBER: TER in amber Lishan Yao (Thu Feb 12 2004 - 09:04:03 CST)
- AMBER: MM-PBSA: molecular charges and active site water Anselm Horn (Thu Feb 12 2004 - 09:23:05 CST)
- AMBER: center of mass in CARNAL Herbert Georg (Thu Feb 12 2004 - 10:15:17 CST)
- AMBER: neutrality of charge in AMBER 7 Sichun Yang (Thu Feb 12 2004 - 14:51:51 CST)
- AMBER: Re: To David Case Małgorzata Jarończyk (Fri Feb 13 2004 - 05:25:52 CST)
- AMBER: minimizating complex-protein with AMBER susan.costantini_at_unina2.it (Sun Feb 15 2004 - 03:27:00 CST)
- AMBER: problem with tleap in Amber donna j (Sun Feb 15 2004 - 20:44:25 CST)
- AMBER: problem with tleap in Amber donna j (Sun Feb 15 2004 - 21:01:27 CST)
- AMBER: MM-PBSA:??Decomposition of receptor energies?? ML (Mon Feb 16 2004 - 03:18:17 CST)
- AMBER: TIP4P Nikolai Smolin (Mon Feb 16 2004 - 04:58:56 CST)
- AMBER: IFC COMPILER Obdulia Rabal (Mon Feb 16 2004 - 06:54:00 CST)
- AMBER: carnal Julien Pecher (Mon Feb 16 2004 - 07:17:33 CST)
- AMBER: DIELC L Jin (Mon Feb 16 2004 - 07:51:35 CST)
- AMBER: bad crd file John (Mon Feb 16 2004 - 09:30:26 CST)
- AMBER: image in ptraj Lishan Yao (Mon Feb 16 2004 - 10:11:25 CST)
- AMBER: TIP4P extended Nikolai Smolin (Mon Feb 16 2004 - 11:06:30 CST)
- AMBER: TIP4P extended Nikolai Smolin (Mon Feb 16 2004 - 11:10:19 CST)
- Re: AMBER: bad crd file Bill Ross (Mon Feb 16 2004 - 12:51:57 CST)
- AMBER: saveamberparm warning in leap? opitz_at_che.udel.edu (Mon Feb 16 2004 - 15:24:45 CST)
- AMBER: multiple messages on the amber reflector David A. Case (Mon Feb 16 2004 - 17:33:40 CST)
- AMBER: moil-view question S. Frank Yan (Mon Feb 16 2004 - 20:43:57 CST)
- AMBER: flexible water potential Herbert Georg (Tue Feb 17 2004 - 05:22:12 CST)
- AMBER: Close contact warnings L Jin (Tue Feb 17 2004 - 08:29:57 CST)
- Re: AMBER: Close contact warnings David A. Case (Tue Feb 17 2004 - 10:39:22 CST)
- Re: AMBER: Close contact warnings L Jin (Tue Feb 17 2004 - 12:14:37 CST)
- Re: AMBER: Close contact warnings David A. Case (Tue Feb 17 2004 - 12:37:06 CST)
- Re: AMBER: Close contact warnings L Jin (Wed Feb 18 2004 - 04:14:55 CST)
- Re: AMBER: Close contact warnings Michael George Lerner (Wed Feb 18 2004 - 07:58:50 CST)
- Re: AMBER: Close contact warnings L Jin (Wed Feb 18 2004 - 10:55:55 CST)
- Re: AMBER: Close contact warnings David A. Case (Wed Feb 18 2004 - 13:34:24 CST)
- Re: AMBER: Close contact warnings L Jin (Tue Feb 17 2004 - 12:14:37 CST)
- Re: AMBER: Close contact warnings Bill Ross (Wed Feb 18 2004 - 12:20:38 CST)
- Re: AMBER: Close contact warnings L Jin (Wed Feb 18 2004 - 12:56:49 CST)
- RE: AMBER: Close contact warnings Yong Duan (Wed Feb 18 2004 - 13:07:36 CST)
- RE: AMBER: Close contact warnings L Jin (Thu Feb 19 2004 - 09:11:54 CST)
- Re: AMBER: Close contact warnings David A. Case (Thu Feb 19 2004 - 10:30:15 CST)
- AMBER: prep files for modified bases Wen Li (Thu Feb 19 2004 - 10:58:01 CST)
- Re: AMBER: prep files for modified bases David A. Case (Thu Feb 19 2004 - 14:23:41 CST)
- Re: AMBER: Close contact warnings L Jin (Wed Feb 18 2004 - 12:56:49 CST)
- Re: AMBER: Close contact warnings Bill Ross (Wed Feb 18 2004 - 13:29:19 CST)
- RE: AMBER: Close contact warnings Bill Ross (Thu Feb 19 2004 - 13:25:33 CST)
- Re: AMBER: Close contact warnings David A. Case (Tue Feb 17 2004 - 10:39:22 CST)
- AMBER: RESP charges for protein fragment Tom Turner (Tue Feb 17 2004 - 10:20:15 CST)
- AMBER: How to add H+ ion in leap? xinchen (Tue Feb 17 2004 - 13:46:10 CST)
- Re: AMBER: center of mass in CARNAL Bill Ross (Tue Feb 17 2004 - 14:25:43 CST)
- Re: AMBER: How to add H+ ion in leap? Bill Ross (Tue Feb 17 2004 - 14:29:17 CST)
- AMBER: (no subject) ThuZar Lwin (Tue Feb 17 2004 - 14:52:40 CST)
- RE: AMBER: (no subject) Ross Walker (Wed Jul 14 2004 - 13:33:38 CDT)
- RE: AMBER: (no subject) FyD (Wed Jul 14 2004 - 14:30:04 CDT)
- AMBER: antechamber Xin Hu (Thu Jul 15 2004 - 13:03:44 CDT)
- Re: AMBER: antechamber Amber admin (Wed May 05 2004 - 15:51:22 CDT)
- Re: AMBER: antechamber Scott Brozell (Wed May 05 2004 - 16:30:17 CDT)
- RE: AMBER: antechamber Ross Walker (Thu Jul 15 2004 - 13:21:44 CDT)
- Re: AMBER: antechamber Xin Hu (Thu Jul 15 2004 - 15:57:09 CDT)
- Re: AMBER: antechamber David A. Case (Thu Jul 15 2004 - 18:30:26 CDT)
- Re: AMBER: antechamber Xin Hu (Thu Jul 15 2004 - 21:51:26 CDT)
- Re: AMBER: antechamber David A. Case (Fri Jul 16 2004 - 11:16:14 CDT)
- Re: AMBER: antechamber Bill Ross (Fri Jul 16 2004 - 12:48:07 CDT)
- AMBER: ptraj Wen Li (Wed Jul 14 2004 - 16:07:11 CDT)
- RE: AMBER: (no subject) FyD (Wed Jul 14 2004 - 14:30:04 CDT)
- Re: AMBER: (no subject) David A. Case (Fri Jul 30 2004 - 15:42:15 CDT)
- RE: AMBER: (no subject) Ross Walker (Wed Jul 14 2004 - 13:33:38 CDT)
- Re: AMBER: (no subject) Bill Ross (Tue Feb 17 2004 - 15:17:39 CST)
- AMBER: multiple messages on the amber reflector Amber Administration (Tue Feb 17 2004 - 16:27:52 CST)
- AMBER: contributed parameters (modified base - PSU) Shau Grossman (Tue Feb 17 2004 - 20:14:16 CST)
- RE: AMBER: contributed parameters (modified base - PSU) S. Frank Yan (Tue Feb 17 2004 - 20:32:56 CST)
- Re: AMBER: contributed parameters FyD (Wed Feb 18 2004 - 11:12:04 CST)
- Re: AMBER: contributed parameters Shau Grossman (Thu Feb 19 2004 - 20:55:46 CST)
- AMBER: ions94.lib file Wen Li (Fri Feb 20 2004 - 11:10:06 CST)
- Re: AMBER: contributed parameters FyD (Fri Feb 20 2004 - 11:08:34 CST)
- Re: AMBER: contributed parameters Shau Grossman (Fri Feb 20 2004 - 15:46:04 CST)
- Re: AMBER: contributed parameters FyD (Fri Feb 20 2004 - 18:05:48 CST)
- AMBER: R.E.D. Shau Grossman (Mon Feb 23 2004 - 19:20:44 CST)
- Re: AMBER: R.E.D. FyD (Mon Feb 23 2004 - 19:42:13 CST)
- Re: AMBER: R.E.D. Shau Grossman (Mon Feb 23 2004 - 20:13:43 CST)
- Re: AMBER: R.E.D. FyD (Tue Feb 24 2004 - 10:16:57 CST)
- Re: AMBER: contributed parameters Shau Grossman (Thu Feb 19 2004 - 20:55:46 CST)
- AMBER: Segmentation fault in SaveAmberParm xinchen (Tue Feb 17 2004 - 21:31:35 CST)
- AMBER: histidine and its various forms Stern, Julie (Wed Feb 18 2004 - 08:38:31 CST)
- AMBER: sander + ewald bomb Carsten Detering (Wed Feb 18 2004 - 13:20:51 CST)
- AMBER: GLYCAM web site Scott Brozell (Wed Feb 18 2004 - 14:00:39 CST)
- AMBER: MD simulations with 2 molecules Joey Harriman (Wed Feb 18 2004 - 14:32:47 CST)
- AMBER: check unit + saveamberparm Carsten Detering (Wed Feb 18 2004 - 20:21:58 CST)
- AMBER: tmd question hj zou (Wed Feb 18 2004 - 20:58:45 CST)
- AMBER: mm_pbsa question hj zou (Wed Feb 18 2004 - 21:22:00 CST)
- AMBER: pmf calculation using gibbs. Myunggi Yi (Wed Feb 18 2004 - 23:22:46 CST)
- AMBER: compiling software(RESP) on MAC G5 yu275197_at_yorku.ca (Wed Feb 18 2004 - 22:47:12 CST)
- Re: AMBER: compiling software(RESP) on MAC G5 Scott Brozell (Wed Feb 18 2004 - 23:36:06 CST)
- Re: AMBER: compiling software(RESP) on MAC G5 FyD (Thu Feb 19 2004 - 10:27:54 CST)
- Re: AMBER: compiling software(RESP) on MAC G5 James W. Caldwell (Thu Feb 19 2004 - 12:50:28 CST)
- Re: AMBER: compiling software(RESP) on MAC G5 David A. Case (Thu Feb 19 2004 - 14:21:39 CST)
- AMBER: compiling xleap on MAC OS X.3 Yunfeng Hu (Wed Mar 03 2004 - 16:19:57 CST)
- Re: AMBER: compiling software(RESP) on MAC G5 Scott Brozell (Wed Feb 18 2004 - 23:36:06 CST)
- AMBER: compiling software(RESP) yu275197_at_yorku.ca (Thu Feb 19 2004 - 00:02:36 CST)
- AMBER: LCPO parameters in gbsa Giulio Rastelli (Thu Feb 19 2004 - 10:53:56 CST)
- AMBER: distance-aromatic ring John (Thu Feb 19 2004 - 05:03:56 CST)
- AMBER: LES Petr Jeřábek (Thu Feb 19 2004 - 12:10:50 CST)
- Re: AMBER: distance-aromatic ring Bill Ross (Thu Feb 19 2004 - 13:41:32 CST)
- Re: AMBER: Build a H+ ion in Leap? Bill Ross (Thu Feb 19 2004 - 14:00:38 CST)
- Re: AMBER: sander output Dave S Walker (Thu Feb 19 2004 - 17:55:59 CST)
- AMBER: The charge given by xleap from amber 5 Ben Cossins (Fri Feb 20 2004 - 06:25:55 CST)
- AMBER: LES methodology question Vlad Cojocaru (Fri Feb 20 2004 - 06:12:14 CST)
- AMBER: Defining residues opitz_at_che.udel.edu (Sat Feb 21 2004 - 22:34:56 CST)
- Re: AMBER: Defining residues David A. Case (Mon Feb 23 2004 - 10:49:58 CST)
- Re: AMBER: Defining residues Bill Ross (Mon Feb 23 2004 - 12:04:33 CST)
- Re: AMBER: Defining residues opitz_at_che.udel.edu (Mon Feb 23 2004 - 13:02:58 CST)
- Re: AMBER: Defining residues Bill Ross (Mon Feb 23 2004 - 14:14:46 CST)
- Re: AMBER: Defining residues opitz_at_che.udel.edu (Mon Feb 23 2004 - 15:35:44 CST)
- Re: AMBER: Defining residues opitz_at_che.udel.edu (Mon Feb 23 2004 - 15:47:51 CST)
- Re: AMBER: Defining residues Bill Ross (Mon Feb 23 2004 - 16:39:48 CST)
- AMBER: xleap don't recognize my residue/atom scopio (Sun Feb 22 2004 - 05:18:42 CST)
- AMBER: Can anybody help me with CHARMM Gabbar Daaku (Sun Feb 22 2004 - 21:13:09 CST)
- Re: AMBER: Can anybody help me with CHARMM Piotr Cieplak (Sun Feb 22 2004 - 21:49:21 CST)
- AMBER: How to add ACE and NME groups? Małgorzata Jarończyk (Mon Feb 23 2004 - 03:47:00 CST)
- AMBER: protein - fractional native contacts uddhavesh bhaskar sonavane (Mon Feb 23 2004 - 05:50:06 CST)
- AMBER: pka calculation hj zou (Mon Feb 23 2004 - 07:33:00 CST)
- AMBER: Thermostat comparison ? MD Tyka, Biochemistry (Mon Feb 23 2004 - 11:41:56 CST)
- AMBER: how to use prep file Fang, Jianwen (Mon Feb 23 2004 - 13:15:19 CST)
- AMBER: problem with frcmod file donna j (Mon Feb 23 2004 - 15:47:12 CST)
- Re: AMBER: problem with frcmod file Bill Ross (Mon Feb 23 2004 - 16:44:08 CST)
- AMBER: Can you write me how can I add the ACE and NMe groups in the Xleap? Małgorzata Jarończyk (Tue Feb 24 2004 - 08:59:46 CST)
- AMBER: carnal Youyi Peng (Tue Feb 24 2004 - 10:36:11 CST)
- AMBER: add Na+ L Jin (Tue Feb 24 2004 - 12:23:55 CST)
- AMBER: Star like (branching) molecule opitz_at_che.udel.edu (Tue Feb 24 2004 - 16:54:45 CST)
- Re: AMBER: Star like (branching) molecule Bill Ross (Tue Feb 24 2004 - 17:40:13 CST)
- AMBER: PGA Beale, John (Wed Feb 25 2004 - 07:09:46 CST)
- AMBER: NMR restraints-Floating point exception John (Wed Feb 25 2004 - 08:44:52 CST)
- AMBER: pmf calculation using gibbs Myunggi Yi (Wed Feb 25 2004 - 10:47:25 CST)
- AMBER: Errors when running tleap Ann P (Wed Feb 25 2004 - 15:13:53 CST)
- Re: AMBER: Errors when running tleap Bill Ross (Wed Feb 25 2004 - 15:31:54 CST)
- AMBER: averaged structure with unknown elements Youyi Peng (Wed Feb 25 2004 - 15:32:54 CST)
- Re: AMBER: averaged structure with unknown elements Bill Ross (Wed Feb 25 2004 - 15:49:40 CST)
- AMBER: mmpbsa qustion hj zou (Wed Feb 25 2004 - 19:23:37 CST)
- AMBER: size.h error Emmanuel Giudice (Thu Feb 26 2004 - 15:15:20 CST)
- AMBER: sander + vlimit exceed... Carsten Detering (Thu Feb 26 2004 - 17:16:31 CST)
- AMBER: pka calculation hj zou (Fri Feb 27 2004 - 20:42:34 CST)
- AMBER: PB in mm-pbsa Sue Heavner (Sat Feb 28 2004 - 10:30:05 CST)
- AMBER: Jiten (Mon Mar 01 2004 - 08:04:17 CST)
- AMBER: GIBBS + vlimit exceeded Miguel de Federico (Mon Mar 01 2004 - 11:17:44 CST)
- AMBER: ptraj Carsten Detering (Mon Mar 01 2004 - 11:23:26 CST)
- Re: AMBER: Piotr Cieplak (Mon Mar 01 2004 - 11:38:49 CST)
- AMBER: production input file Ryan Ye (Mon Mar 01 2004 - 12:58:48 CST)
- AMBER: Problems with xleap Javier Perez Miron (Thu Feb 26 2004 - 19:18:11 CST)
- AMBER: error in minimization atchara_at_mercury.hec.utah.edu (Tue Mar 02 2004 - 11:47:14 CST)
- AMBER: A question about RMSD calculation yonchen (Tue Mar 02 2004 - 13:05:13 CST)
- AMBER: How to use tleap convert *.pdb file to *.crd and *.top files yonchen (Tue Mar 02 2004 - 13:08:55 CST)
- Re: AMBER: A question about RMSD calculation Bill Ross (Tue Mar 02 2004 - 13:53:11 CST)
- AMBER: diffusion coefficient with external applied electric field Ioana Cozmuta (Tue Mar 02 2004 - 14:36:35 CST)
- AMBER: General Questions Sekwan Oh (Tue Mar 02 2004 - 18:07:08 CST)
- AMBER: HIV-RT Nevirapin Annette Höglund (Wed Mar 03 2004 - 09:37:40 CST)
- AMBER: torsion term Guanglei Cui (Wed Mar 03 2004 - 10:48:36 CST)
- AMBER: questions about mmpbsa xhu1_at_memphis.edu (Wed Mar 03 2004 - 13:48:12 CST)
- AMBER: pls forget my first question in my last email xhu1_at_memphis.edu (Wed Mar 03 2004 - 14:02:06 CST)
- Re: AMBER: compiling xleap on MAC OS X.3 Bill Ross (Wed Mar 03 2004 - 16:37:50 CST)
- AMBER: Use tleap convert *.pdb file to *.top and *.crd file yonchen (Wed Mar 03 2004 - 22:01:04 CST)
- AMBER: Question about RMSD calculation yonchen (Wed Mar 03 2004 - 22:25:01 CST)
- Re: AMBER: Question about RMSD calculation Carlos Simmerling (Wed Mar 03 2004 - 22:43:58 CST)
- AMBER: Leap atom removal bug? david.evans_at_ulsop.ac.uk (Thu Mar 04 2004 - 04:30:01 CST)
- Re: AMBER: Leap atom removal bug? david.evans_at_ulsop.ac.uk (Thu Mar 04 2004 - 05:30:00 CST)
- Re: AMBER: Leap atom removal bug? Bill Ross (Thu Mar 04 2004 - 07:06:44 CST)
- Re: AMBER: Leap atom removal bug? David A. Case (Thu Mar 04 2004 - 10:00:08 CST)
- Re: AMBER: Leap atom removal bug? Scott Brozell (Fri Mar 05 2004 - 20:34:16 CST)
- Re: AMBER: Use tleap convert *.pdb file to *.top and *.crd file Bill Ross (Thu Mar 04 2004 - 07:11:45 CST)
- AMBER: conversion of Amber 7 .pdb file to .bgf file Peter Oelschlaeger (Thu Mar 04 2004 - 16:31:43 CST)
- Re: AMBER: conversion of Amber 7 .pdb file to .bgf file David A. Case (Thu Mar 04 2004 - 16:59:21 CST)
- Re: AMBER: conversion of Amber 7 .pdb file to .bgf file Peter Oelschlaeger (Thu Mar 04 2004 - 20:00:34 CST)
- AMBER: recovering total force array Dave S Walker (Thu Mar 11 2004 - 20:20:57 CST)
- Re: AMBER: recovering total force array David A. Case (Fri Mar 12 2004 - 11:13:57 CST)
- Re: AMBER: recovering total force array Dave S Walker (Tue Mar 30 2004 - 19:51:41 CST)
- Re: AMBER: recovering total force array Carlos Simmerling (Tue Mar 30 2004 - 20:11:28 CST)
- Re: AMBER: recovering total force array Dave S Walker (Wed Mar 31 2004 - 15:29:13 CST)
- Re: AMBER: recovering total force array Carlos Simmerling (Wed Mar 31 2004 - 15:39:18 CST)
- Re: AMBER: recovering total force array Dave S Walker (Tue Oct 19 2004 - 14:04:16 CDT)
- Re: AMBER: recovering total force array David A. Case (Tue Oct 19 2004 - 16:26:31 CDT)
- Re: AMBER: recovering total force array Dave S Walker (Tue Oct 19 2004 - 18:59:00 CDT)
- Re: AMBER: conversion of Amber 7 .pdb file to .bgf file David A. Case (Thu Mar 04 2004 - 16:59:21 CST)
- AMBER: PKA calculation hj zou (Fri Mar 05 2004 - 00:34:21 CST)
- AMBER: positive binding free energy hj zou (Fri Mar 05 2004 - 00:53:18 CST)
- AMBER: MD at different pH !! Jiten (Fri Mar 05 2004 - 00:30:30 CST)
- Re: AMBER: MD at different pH !! David A. Case (Fri Mar 05 2004 - 10:23:27 CST)
- AMBER: Ewald calculation using PME for charged system Byungchan Kim (Fri Mar 05 2004 - 12:13:43 CST)
- AMBER: Ewald calculation using PME for charged system Byungchan Kim (Tue Mar 09 2004 - 15:04:31 CST)
- Re: AMBER: Ewald calculation using PME for charged system David A. Case (Tue Mar 09 2004 - 16:58:29 CST)
- Re: AMBER: Ewald calculation using PME for charged system Byungchan Kim (Tue Mar 09 2004 - 17:09:18 CST)
- Re: AMBER: Ewald calculation using PME for charged system Wayne Dawson (Tue Mar 09 2004 - 21:28:36 CST)
- Re: AMBER: Ewald calculation using PME for charged system David A. Case (Wed Mar 10 2004 - 02:11:54 CST)
- Re: AMBER: MD at different pH !! Xin Chen (Fri Mar 05 2004 - 14:04:46 CST)
- AMBER: Ewald calculation using PME for charged system Byungchan Kim (Fri Mar 05 2004 - 12:13:43 CST)
- Re: AMBER: MD at different pH !! Do Anh Tuan (Fri Mar 05 2004 - 15:11:25 CST)
- Re: AMBER: MD at different pH !! Bimo Ario Tejo (Fri Mar 05 2004 - 20:43:36 CST)
- Re: AMBER: MD at different pH !! Do Anh Tuan (Fri Mar 05 2004 - 22:20:04 CST)
- Re: AMBER: MD at different pH !! Bimo Ario Tejo (Fri Mar 05 2004 - 22:58:39 CST)
- Re: AMBER: MD at different pH !! Jiten (Sat Mar 06 2004 - 01:37:27 CST)
- Re: AMBER: MD at different pH !! Bimo Ario Tejo (Sat Mar 06 2004 - 06:18:15 CST)
- Re: AMBER: MD at different pH !! Bimo Ario Tejo (Fri Mar 05 2004 - 20:43:36 CST)
- Re: AMBER: MD at different pH !! David A. Case (Fri Mar 05 2004 - 10:23:27 CST)
- AMBER: AMBER7 sander compiled on SGI R10000 fails to complete test suite james.m.woolven_at_gsk.com (Fri Mar 05 2004 - 06:40:31 CST)
- AMBER: Sander problem with different CPU yuann (Fri Mar 05 2004 - 06:29:49 CST)
- AMBER: Unbinding with different pH Volodymyr Nechiporuk-Zloy (Fri Mar 05 2004 - 08:10:23 CST)
- AMBER: A Question about RESP ::Šž¸Ű:: (Sat Mar 06 2004 - 06:39:22 CST)
- Re: AMBER: A Question about RESP Bimo Ario Tejo (Sat Mar 06 2004 - 07:31:51 CST)
- Re: AMBER: A Question about RESP Ming-Hsun Ho (Sat Mar 06 2004 - 07:58:44 CST)
- Re: AMBER: A Question about RESP Ming-Hsun Ho (Sat Mar 06 2004 - 09:28:25 CST)
- Re: AMBER: A Question about RESP Jiten (Sat Mar 06 2004 - 20:54:52 CST)
- RE: AMBER: A Question about RESP William Wei (Mon Mar 15 2004 - 09:23:57 CST)
- AMBER: understanding SANDER source code myang (Sat Mar 20 2004 - 09:33:33 CST)
- Re: AMBER: understanding SANDER source code Scott Brozell (Sun Mar 21 2004 - 13:47:40 CST)
- RE: AMBER: understanding SANDER source code Yong Duan (Sun Mar 21 2004 - 20:32:03 CST)
- Re: AMBER: understanding SANDER source code Andreas Svrcek-Seiler (Mon Mar 22 2004 - 06:15:42 CST)
- Re: AMBER: understanding SANDER source code David E. Konerding (Mon Mar 22 2004 - 10:15:49 CST)
- Re: AMBER: A Question about RESP Jiten (Sat Mar 06 2004 - 20:54:52 CST)
- Re: AMBER: A Question about RESP Ming-Hsun Ho (Sat Mar 06 2004 - 09:58:38 CST)
- Re: AMBER: A Question about RESP Ming-Hsun Ho (Sun Mar 07 2004 - 00:15:16 CST)
- AMBER: pka questions hj zou (Sat Mar 06 2004 - 21:22:54 CST)
- AMBER: antechamber prepin Guanglei Cui (Sun Mar 07 2004 - 13:03:22 CST)
- AMBER: factor used in b-factor calculation Fabian Boes (Tue Mar 09 2004 - 02:12:11 CST)
- AMBER: a problem about alanine scan of proline luocheng (Tue Mar 09 2004 - 03:00:27 CST)
- AMBER: Amber on RedHat 3.0 madeleine.richard_at_bull.net (Tue Mar 09 2004 - 03:39:47 CST)
- AMBER: MD simulation of a DNA decamer Thomas Steinbrecher (Tue Mar 09 2004 - 04:10:15 CST)
- AMBER: what's the meaning of parameter NRUN scopio (Tue Mar 09 2004 - 07:40:51 CST)
- AMBER: NMR restraint in sander Lishan Yao (Tue Mar 09 2004 - 08:19:30 CST)
- AMBER: Residue question opitz_at_che.udel.edu (Tue Mar 09 2004 - 10:29:22 CST)
- AMBER: mol2 vs. prepin opitz_at_che.udel.edu (Tue Mar 09 2004 - 10:53:46 CST)
- AMBER: sander + child process died Carsten Detering (Tue Mar 09 2004 - 20:18:21 CST)
- AMBER: positive binding free energy hj zou (Wed Mar 10 2004 - 00:43:58 CST)
- AMBER: Some questions in building a new residue Chung-Chien Wei (Wed Mar 10 2004 - 11:16:37 CST)
- AMBER: residue insertion Yunfeng Hu (Wed Mar 10 2004 - 18:24:52 CST)
- AMBER: positive binding free energy hj zou (Thu Mar 11 2004 - 07:59:09 CST)
- AMBER: PMEMD COMPILATION REDHAT Obdulia Rabal (Thu Mar 11 2004 - 12:36:45 CST)
- AMBER: Atomic Charge in Residue opitz_at_che.udel.edu (Thu Mar 11 2004 - 13:29:21 CST)
- AMBER: compiling on SGI Beale, John (Thu Mar 11 2004 - 15:26:22 CST)
- AMBER: Resizing sizes.h and recompiling problem! Marco Aurelio Correia Preto (Sat Mar 13 2004 - 08:38:56 CST)
- AMBER: Anal module on PDBs Sanjeev B.S. (Sat Mar 13 2004 - 09:35:31 CST)
- Re: AMBER: Anal module on PDBs Bill Ross (Sat Mar 13 2004 - 18:17:25 CST)
- AMBER: xleap couldn't display any word scopio (Sun Mar 14 2004 - 20:45:42 CST)
- Re: AMBER: xleap couldn't display any word John Bushnell (Mon Mar 15 2004 - 13:46:50 CST)
- Re: AMBER: xleap couldn't display any word scopio (Mon Mar 15 2004 - 19:44:47 CST)
- AMBER: About RESP Calculation Ilyas Yildirim (Fri Mar 19 2004 - 01:20:16 CST)
- Re: AMBER: About RESP Calculation David A. Case (Fri Mar 19 2004 - 10:14:29 CST)
- Re: AMBER: About RESP Calculation Ilyas Yildirim (Fri Mar 19 2004 - 13:50:13 CST)
- Re: AMBER: About RESP Calculation FyD (Fri Mar 19 2004 - 14:10:19 CST)
- Re: AMBER: About RESP Calculation David A. Case (Fri Mar 19 2004 - 14:15:39 CST)
- Re: AMBER: About RESP Calculation FyD (Fri Mar 19 2004 - 14:30:00 CST)
- Re: AMBER: About RESP Calculation Qing Zhang (Sat Mar 20 2004 - 00:43:03 CST)
- Re: AMBER: About RESP Calculation FyD (Sun Mar 21 2004 - 01:30:41 CST)
- Re: AMBER: About RESP Calculation FyD (Fri Mar 19 2004 - 11:45:22 CST)
- Re: AMBER: xleap couldn't display any word scopio (Mon Mar 15 2004 - 19:44:47 CST)
- Re: AMBER: xleap couldn't display any word John Bushnell (Mon Mar 15 2004 - 13:46:50 CST)
- AMBER: Release announcement for Amber 8 David A. Case (Mon Mar 15 2004 - 00:39:25 CST)
- AMBER: new wed site for amber tutorials Juan Fernandez-Carmona (Mon Mar 15 2004 - 02:57:29 CST)
- AMBER: How to convert charmm parameters to amber scopio (Mon Mar 15 2004 - 03:55:11 CST)
- AMBER: [Fwd: No timings from jac test on opteron quad] Arvid Soderhall (Mon Mar 15 2004 - 07:28:02 CST)
- AMBER: antechamber/mopac question opitz_at_che.udel.edu (Mon Mar 15 2004 - 14:20:24 CST)
- AMBER: rdparm/ptraj writeparm david.evans_at_ulsop.ac.uk (Tue Mar 16 2004 - 02:57:16 CST)
- AMBER: re:can i get help from you? hj zou (Tue Mar 16 2004 - 07:53:48 CST)
- AMBER: literature question/residue charges opitz_at_che.udel.edu (Tue Mar 16 2004 - 14:09:43 CST)
- Re: AMBER: trajectory file Bill Ross (Tue Mar 16 2004 - 14:54:10 CST)
- Re: AMBER: literature question/residue charges Piotr Cieplak (Tue Mar 16 2004 - 16:07:21 CST)
- AMBER: How to use these parameters? scopio (Tue Mar 16 2004 - 19:15:15 CST)
- AMBER: description of toplogy file format? Oliver Hucke (Tue Mar 16 2004 - 19:44:10 CST)
- AMBER: segmentation fault with sander Carsten Detering (Tue Mar 16 2004 - 20:29:55 CST)
- AMBER: MD problem. Osman Gani (Wed Mar 17 2004 - 05:07:47 CST)
- AMBER: amber98 with amberffc+INSIGHT II a b (Wed Mar 17 2004 - 08:28:58 CST)
- AMBER: protein-protein interaction Oscar Rey i Puiggrňs (Wed Mar 17 2004 - 08:50:06 CST)
- AMBER: Preparing complex in Xleap for Amber calculations warka_at_il.waw.pl (Wed Mar 17 2004 - 10:02:38 CST)
- AMBER: using LJ 10-12 non bonded potential for glycoproteins in Amber8 Tom Turner (Wed Mar 17 2004 - 12:49:18 CST)
- AMBER: segmentation fault Hailong Lin (Thu Mar 18 2004 - 06:48:24 CST)
- AMBER: segmentation fault when convert pdb to mol2 Ye Mei (Thu Mar 18 2004 - 07:02:44 CST)
- Re: AMBER: segmentation fault Bill Ross (Thu Mar 18 2004 - 12:22:24 CST)
- AMBER: alignment problem using carnal xhu1_at_memphis.edu (Thu Mar 18 2004 - 13:48:55 CST)
- AMBER: About RESP Calculation Chris Moth (Fri Mar 19 2004 - 15:38:40 CST)
- AMBER: EWALD BOMB? Ryan Ye (Sat Mar 20 2004 - 13:28:01 CST)
- AMBER: langevin dynamics Wei Fu (Sun Mar 21 2004 - 21:22:27 CST)
- AMBER: Compilation problem in SUN OS 5.7! Pradipta Bandyopadhyay (Mon Mar 22 2004 - 02:48:59 CST)
- AMBER: Assignment of parameters, missing parameters Julien Michel (Mon Mar 22 2004 - 09:47:15 CST)
- AMBER: gibbs dynamic memory error jwfang (Mon Mar 22 2004 - 10:43:46 CST)
- AMBER: Re: About RESP Calculation FyD (Mon Mar 22 2004 - 11:09:00 CST)
- AMBER: SANDER general questions. Osman Gani (Mon Mar 22 2004 - 11:37:18 CST)
- AMBER: [Fwd: KLAMBDA in amber7] Ahammadunny Pathiaseril (Mon Mar 22 2004 - 12:44:11 CST)
- AMBER: downloading antechamber astrid.maass (Tue Mar 23 2004 - 01:53:56 CST)
- AMBER: M7G parameters Vlad Cojocaru (Tue Mar 23 2004 - 06:43:55 CST)
- AMBER: Residue Charges opitz_at_che.udel.edu (Tue Mar 23 2004 - 09:17:38 CST)
- AMBER: About glycam2004 Javier Perez Miron (Wed Mar 17 2004 - 21:02:47 CST)
- AMBER: gibbs error Fang, Jianwen (Tue Mar 23 2004 - 10:27:22 CST)
- AMBER: How to make leap recognise inosine? arvind_at_mbu.iisc.ernet.in (Tue Mar 23 2004 - 11:33:40 CST)
- Re: AMBER: How to make leap recognise inosine? Bill Ross (Tue Mar 23 2004 - 11:57:27 CST)
- AMBER: residence time Ioana Cozmuta (Tue Mar 23 2004 - 21:51:10 CST)
- AMBER: fluorine in mmpbsa ferranna_at_unimore.it (Wed Mar 24 2004 - 03:49:27 CST)
- AMBER: Amber: Equilibrated DMSO solvent box Marco Aurelio Correia Preto (Wed Mar 24 2004 - 05:32:31 CST)
- AMBER: non-isotropic pressure scaling Lubos Vrbka (Wed Mar 24 2004 - 06:38:08 CST)
- Re: AMBER: non-isotropic pressure scaling Robert Duke (Wed Mar 24 2004 - 07:44:35 CST)
- Re: AMBER: non-isotropic pressure scaling Lubos Vrbka (Wed Mar 24 2004 - 08:33:20 CST)
- Re: AMBER: non-isotropic pressure scaling Lubos Vrbka (Wed Mar 31 2004 - 13:44:19 CST)
- Re: AMBER: non-isotropic pressure scaling Robert Duke (Wed Mar 31 2004 - 14:35:14 CST)
- Re: AMBER: non-isotropic pressure scaling Lubos Vrbka (Wed Apr 14 2004 - 07:48:59 CDT)
- Re: AMBER: non-isotropic pressure scaling David A. Case (Wed Apr 14 2004 - 10:36:52 CDT)
- Re: AMBER: non-isotropic pressure scaling Lubos Vrbka (Wed Apr 14 2004 - 11:18:22 CDT)
- Re: AMBER: non-isotropic pressure scaling David A. Case (Wed Apr 14 2004 - 11:56:52 CDT)
- Re: AMBER: non-isotropic pressure scaling Lubos Vrbka (Wed Apr 14 2004 - 14:21:54 CDT)
- Re: AMBER: non-isotropic pressure scaling Robert Duke (Sun Apr 18 2004 - 08:44:09 CDT)
- AMBER: ntwprt feature in AMBER7 Dave S Walker (Thu May 06 2004 - 21:26:51 CDT)
- Re: AMBER: non-isotropic pressure scaling Robert Duke (Wed Mar 24 2004 - 07:44:35 CST)
- AMBER: Cadmium Beale, John (Wed Mar 24 2004 - 07:10:36 CST)
- AMBER: make sure of the Magnesium parameters sychen (Wed Mar 24 2004 - 12:15:25 CST)
- Re: AMBER: make sure of the Magnesium parameters Rhonda Torres (Wed Mar 24 2004 - 12:53:55 CST)
- AMBER: INtel Fortran 90 compiler Carsten Detering (Wed Mar 24 2004 - 13:03:17 CST)
- Re: AMBER: INtel Fortran 90 compiler Robert Duke (Wed Mar 24 2004 - 14:36:35 CST)
- Re: AMBER: INtel Fortran 90 compiler Scott Brozell (Wed Mar 24 2004 - 15:37:37 CST)
- Re: AMBER: INtel Fortran 90 compiler Robert Duke (Wed Mar 24 2004 - 16:01:54 CST)
- Re: AMBER: INtel Fortran 90 compiler Robert Duke (Wed Mar 24 2004 - 16:54:01 CST)
- Re: AMBER: INtel Fortran 90 compiler Bill Ross (Wed Mar 24 2004 - 15:41:30 CST)
- AMBER: INtel Fortran 90 compiler Carsten Detering (Wed Mar 24 2004 - 13:03:17 CST)
- Re: AMBER: make sure of the Magnesium parameters Rhonda Torres (Wed Mar 24 2004 - 12:53:55 CST)
- AMBER: vlimit and vmax problem Venkata S Koppuravuri (Wed Mar 24 2004 - 12:25:31 CST)
- AMBER: Glycam04 Karl N. Kirschner (Wed Mar 24 2004 - 13:37:56 CST)
- PMEMD and myrinet trouble Chris Moth (Wed Mar 24 2004 - 15:25:57 CST)
- AMBER: antechamber download files should now be available David A. Case (Wed Mar 24 2004 - 17:05:19 CST)
- AMBER: RE: Amber: Equilibrated DMSO solvent box Marco Aurelio Correia Preto (Thu Mar 25 2004 - 03:26:41 CST)
- AMBER: MM_PBSA GB parameters david.evans_at_ulsop.ac.uk (Thu Mar 25 2004 - 04:54:59 CST)
- AMBER: phosphorylated serin / histidin Nadine Homeyer (Thu Mar 25 2004 - 07:04:38 CST)
- AMBER: FW: Problems with antechamber innstallation Osman Gani (Thu Mar 25 2004 - 09:12:20 CST)
- AMBER: Antechamber MOPAC Beale, John (Thu Mar 25 2004 - 09:24:56 CST)
- AMBER: hbond analysis in ptraj(%occupied>1) Lishan Yao (Thu Mar 25 2004 - 09:19:01 CST)
- AMBER: undefined loops and protonate Stern, Julie (Thu Mar 25 2004 - 11:52:41 CST)
- AMBER: eedmeth atchara_at_mercury.hec.utah.edu (Thu Mar 25 2004 - 12:53:23 CST)
- AMBER: Error while protonating a PDB file Mike (Thu Mar 25 2004 - 17:47:54 CST)
- AMBER: Pang-model of Zn2+ Oliver Hucke (Thu Mar 25 2004 - 19:04:48 CST)
- AMBER: Pang Zn2+ model - correction Oliver Hucke (Thu Mar 25 2004 - 19:32:30 CST)
- AMBER: a question about anal Xiao He (Thu Mar 25 2004 - 21:06:10 CST)
- AMBER: nmanal - segmentation fault Sivakolundu, Sivashankar (Fri Mar 26 2004 - 00:11:16 CST)
- AMBER: tleap error and warnings Mike (Fri Mar 26 2004 - 01:06:38 CST)
- AMBER: How to compile antechamber? scopio (Fri Mar 26 2004 - 01:17:54 CST)
- AMBER: Problem solved Xiao He (Fri Mar 26 2004 - 09:35:01 CST)
- AMBER: Xiaowei Li (Fri Mar 26 2004 - 14:21:08 CST)
- Re: Fwd: Re: AMBER: Pang-model of Zn2+ Oliver Hucke (Fri Mar 26 2004 - 15:29:24 CST)
- AMBER: questions for PNA parameters Suwipa saen-oon (Fri Mar 26 2004 - 21:36:56 CST)
- AMBER: erreo in sander Anshul Awasthi (Sat Mar 27 2004 - 07:15:54 CST)
- AMBER: solvation energy hj zou (Sun Mar 28 2004 - 11:36:31 CST)
- AMBER: fix two groups Helios Chen (Sun Mar 28 2004 - 21:07:07 CST)
- AMBER: pmemd machinefiles Lubos Vrbka (Mon Mar 29 2004 - 04:38:13 CST)
- AMBER: radial distribution franck (Mon Mar 29 2004 - 07:20:48 CST)
- Re: AMBER: HBOND calculation Bill Ross (Mon Mar 29 2004 - 12:24:59 CST)
- AMBER: segmentation fault of minimization scopio (Mon Mar 29 2004 - 20:57:39 CST)
- AMBER: gaff: hydrogen atom types astrid.maass (Tue Mar 30 2004 - 01:37:58 CST)
- AMBER: segmentation fault when running parmchk Ye Mei (Tue Mar 30 2004 - 03:52:14 CST)
- Re: AMBER: segmentation fault when running parmchk David A. Case (Wed Mar 31 2004 - 11:50:54 CST)
- Re: AMBER: segmentation fault when running parmchk Chutintorn Punwong (Mon May 24 2004 - 17:34:11 CDT)
- Re: AMBER: segmentation fault when running parmchk David A. Case (Mon May 24 2004 - 23:41:14 CDT)
- Re: AMBER: segmentation fault when running parmchk Chutintorn Punwong (Thu May 27 2004 - 13:01:16 CDT)
- Re: AMBER: segmentation fault when running parmchk David A. Case (Thu May 27 2004 - 13:24:27 CDT)
- Re: AMBER: segmentation fault when running parmchk Chutintorn Punwong (Thu May 27 2004 - 13:37:09 CDT)
- Re: AMBER: segmentation fault when running parmchk David A. Case (Thu May 27 2004 - 18:47:49 CDT)
- Re: AMBER: segmentation fault when running parmchk Chutintorn Punwong (Fri May 28 2004 - 15:08:56 CDT)
- Re: AMBER: segmentation fault when running parmchk Chutintorn Punwong (Wed Jun 02 2004 - 12:57:06 CDT)
- Re: AMBER: segmentation fault when running parmchk David A. Case (Wed Jun 02 2004 - 13:41:56 CDT)
- Re: AMBER: segmentation fault when running parmchk Chutintorn Punwong (Wed Jun 02 2004 - 14:11:22 CDT)
- Re: AMBER: segmentation fault when running parmchk Chutintorn Punwong (Tue Jun 08 2004 - 13:07:45 CDT)
- Re: AMBER: segmentation fault when running parmchk David A. Case (Fri Jun 11 2004 - 10:00:13 CDT)
- Re: AMBER: segmentation fault when running parmchk David A. Case (Mon May 24 2004 - 23:41:14 CDT)
- Re: AMBER: segmentation fault when running parmchk Bill Ross (Tue Jun 08 2004 - 13:16:35 CDT)
- AMBER: Bad atom symbol, K+ and IB in vacuum Skauge Tormod (Tue Mar 30 2004 - 06:50:42 CST)
- AMBER: solvation energy hj zou (Tue Mar 30 2004 - 06:55:20 CST)
- AMBER: pmemd speedup and interactions Lubos Vrbka (Wed Mar 31 2004 - 03:27:21 CST)
- AMBER: pmemd speedup and interactions Lubos Vrbka (Wed Mar 31 2004 - 03:55:14 CST)
- AMBER: Pasrameters for MAI Anshul Awasthi (Wed Mar 31 2004 - 15:46:18 CST)
- AMBER: test output of amber8 Oliver Hucke (Wed Mar 31 2004 - 17:54:38 CST)
- AMBER: about glycam 04 Javier Perez Miron (Mon Mar 29 2004 - 11:40:18 CST)
- AMBER: Question on Amber7... Pmartin (Thu Apr 01 2004 - 17:31:49 CST)
- AMBER: Mac OSX xleap compilation Sergio Pantano (Fri Apr 02 2004 - 00:32:07 CST)
- AMBER: PERT.charge problem in xleap Helios Chen (Fri Apr 02 2004 - 06:10:54 CST)
- AMBER: Alignment tensor for Sander RDCs tim (Fri Apr 02 2004 - 08:47:47 CST)
- AMBER: Parameters for ions? nie beining (Fri Apr 02 2004 - 12:15:51 CST)
- AMBER: installing amber8 on a dual processor single box Carsten Detering (Fri Apr 02 2004 - 12:37:46 CST)
- AMBER: Intel fortran compiler and -static switch in older pmemd releases Robert Duke (Fri Apr 02 2004 - 15:10:49 CST)
- AMBER: question about image Youyi Peng (Fri Apr 02 2004 - 16:41:36 CST)
- AMBER: sander + ew_legal.h Carsten Detering (Fri Apr 02 2004 - 19:08:07 CST)
- AMBER: question about image - truncated octahedron Chris Moth (Sat Apr 03 2004 - 09:22:14 CST)
- AMBER: amber8 tutorial Patil, Sachin (Sun Apr 04 2004 - 19:03:20 CDT)
- AMBER: Error in building a molecule anshul_at_imtech.res.in (Mon Apr 05 2004 - 17:01:54 CDT)
- AMBER: minimization of GLH Hailong Lin (Mon Apr 05 2004 - 06:57:31 CDT)
- AMBER: Antechamber compilation error Arvind (Mon Apr 05 2004 - 11:22:21 CDT)
- AMBER: antechamber: frcmod parameter need revision atchara_at_mercury.hec.utah.edu (Mon Apr 05 2004 - 16:11:12 CDT)
- AMBER: which parameters for Ca2+ ? cailliez (Tue Apr 06 2004 - 02:50:03 CDT)
- AMBER: anshul_at_imtech.res.in (Tue Apr 06 2004 - 16:58:07 CDT)
- AMBER: free energy perturbation Herbert Georg (Tue Apr 06 2004 - 10:21:55 CDT)
- AMBER: which atoms are H's for SHAKE? Oliver Hucke (Tue Apr 06 2004 - 12:32:12 CDT)
- AMBER: gibbs calculation Carsten Detering (Tue Apr 06 2004 - 13:11:55 CDT)
- AMBER: new leap with old gibbs Carsten Detering (Tue Apr 06 2004 - 14:16:01 CDT)
- Re: AMBER: new leap with old gibbs David A. Case (Tue Apr 06 2004 - 16:31:10 CDT)
- Re: AMBER: new leap with old gibbs Carsten Detering (Tue Apr 06 2004 - 16:48:26 CDT)
- Re: AMBER: new leap with old gibbs David A. Case (Tue Apr 06 2004 - 19:13:57 CDT)
- AMBER: MOPAC 7 - How to modift the mopac.sh file to run antechamber properly? Ilyas Yildirim (Tue Apr 06 2004 - 19:27:31 CDT)
- Re: AMBER: MOPAC 7 - How to modift the mopac.sh file to run antechamber properly? Ilyas Yildirim (Tue Apr 06 2004 - 20:25:46 CDT)
- Re: AMBER: MOPAC 7 - How to modift the mopac.sh file to run antechamber properly? David A. Case (Wed Apr 07 2004 - 10:19:27 CDT)
- Re: AMBER: new leap with old gibbs Carsten Detering (Tue Apr 06 2004 - 16:48:26 CDT)
- Re: AMBER: new leap with old gibbs David A. Case (Tue Apr 06 2004 - 16:31:10 CDT)
- Re: AMBER: which atoms are H's for SHAKE? Bill Ross (Tue Apr 06 2004 - 15:11:41 CDT)
- AMBER: more vlimit exceeded problems... Linda Prengaman (Tue Apr 06 2004 - 21:22:44 CDT)
- AMBER: Amber 8 ptraj segmentation fault Sivakolundu, Sivashankar (Wed Apr 07 2004 - 00:49:08 CDT)
- AMBER: riccardodesantis_at_fastwebnet.it (Wed Apr 07 2004 - 01:02:57 CDT)
- AMBER: ANAL: how can i buld the anal.in file? riccardodesantis_at_fastwebnet.it (Wed Apr 07 2004 - 01:14:49 CDT)
- AMBER: Error message while testing Alessio Comisso (Wed Apr 07 2004 - 06:53:24 CDT)
- AMBER: error in antechamber anshul_at_imtech.res.in (Wed Apr 07 2004 - 17:49:47 CDT)
- AMBER: unique atom names anshul_at_imtech.res.in (Wed Apr 07 2004 - 18:00:31 CDT)
- AMBER: unique atom names Chris Moth (Wed Apr 07 2004 - 09:20:11 CDT)
- AMBER: Ti of CH3 -> NH2 Carsten Detering (Wed Apr 07 2004 - 17:14:11 CDT)
- AMBER: bug of leap? Ye Mei (Wed Apr 07 2004 - 21:27:11 CDT)
- AMBER: bug of leap? Ye Mei (Wed Apr 07 2004 - 21:29:07 CDT)
- AMBER: Carnal in Amber7 Sichun Yang (Wed Apr 07 2004 - 23:03:35 CDT)
- AMBER: warning about improper dihedral in leap!! Pradipta Bandyopadhyay (Thu Apr 08 2004 - 06:50:18 CDT)
- AMBER: Beale, John (Thu Apr 08 2004 - 08:04:04 CDT)
- Re: AMBER: Carnal in Amber7 Bill Ross (Thu Apr 08 2004 - 13:16:02 CDT)
- AMBER: Dipole moment changes during MD Jiten (Thu Apr 08 2004 - 20:31:17 CDT)
- AMBER: script on tutorial page Ioana Cozmuta (Thu Apr 08 2004 - 21:25:50 CDT)
- AMBER: NMODE xiaowei li (Fri Apr 09 2004 - 15:20:23 CDT)
- AMBER: Suggestions for newer pentium chips and hyperthreading with PMEMD Robert Duke (Fri Apr 09 2004 - 16:13:59 CDT)
- AMBER: equilibration does not start with SHAKE Oliver Hucke (Fri Apr 09 2004 - 17:30:55 CDT)
- AMBER: amber/pmemd with mpiexec Lubos Vrbka (Sat Apr 10 2004 - 11:50:30 CDT)
- AMBER: Antechamber compilation: leap error Arvind (Mon Apr 12 2004 - 06:05:58 CDT)
- AMBER: XLeap: head/tail and frcmod L Jin (Mon Apr 12 2004 - 06:35:47 CDT)
- AMBER: Compiling Amber 8 Beale, John (Mon Apr 12 2004 - 08:44:25 CDT)
- Re: AMBER: Compiling Amber 8 Viktor Hornak (Mon Apr 12 2004 - 08:53:29 CDT)
- Re: AMBER: Compiling Amber 8 Robert Duke (Mon Apr 12 2004 - 09:22:27 CDT)
- Re: AMBER: Compiling Amber 8 Andreas Svrcek-Seiler (Tue Apr 13 2004 - 04:57:29 CDT)
- Re: AMBER: Compiling Amber 8 Bill Ross (Tue Apr 13 2004 - 11:38:58 CDT)
- AMBER: Group in sander xiaowei li (Mon Apr 12 2004 - 14:05:29 CDT)
- AMBER: scali amber8 Guanglei Cui (Mon Apr 12 2004 - 15:02:11 CDT)
- AMBER: ptraj pengyo_at_UMDNJ.EDU (Mon Apr 12 2004 - 15:09:22 CDT)
- AMBER: water hole Holly Freedman (Mon Apr 12 2004 - 16:43:32 CDT)
- Re: AMBER: water hole Carlos Simmerling (Mon Apr 12 2004 - 17:40:13 CDT)
- Re: AMBER: water hole David A. Case (Mon Apr 12 2004 - 19:13:37 CDT)
- Re: AMBER: water hole Bill Ross (Mon Apr 12 2004 - 20:58:47 CDT)
- Re: AMBER: water hole Amber Administration (Wed Apr 14 2004 - 18:59:31 CDT)
- Re: AMBER: water hole Bill Ross (Thu Apr 15 2004 - 13:49:02 CDT)
- AMBER: how to use mm_pbsa_statistics.pl independently Jufang Shan (Mon Apr 12 2004 - 21:23:36 CDT)
- AMBER: Re: a new question Viktor Hornak (Mon Apr 12 2004 - 22:02:35 CDT)
- AMBER: WHICH LINUX Raj Badhan (Tue Apr 13 2004 - 09:50:52 CDT)
- AMBER: how to check metal ion bonding ? Venkata S Koppuravuri (Tue Apr 13 2004 - 14:13:52 CDT)
- Re: AMBER: how to check metal ion bonding ? Bill Ross (Tue Apr 13 2004 - 16:34:52 CDT)
- AMBER: Amber 7 on SGI: Sander MPI problem Rohn Wood (Tue Apr 13 2004 - 17:34:12 CDT)
- AMBER: Creating Parmtop files for NAMD Edward Patrick Obrien (Tue Apr 13 2004 - 19:37:52 CDT)
- AMBER: Amber and Linux compilation Raj Badhan (Wed Apr 14 2004 - 06:26:36 CDT)
- Re: AMBER: Amber and Linux compilation Ye Mei (Wed Apr 14 2004 - 06:52:55 CDT)
- Re: AMBER: Amber and Linux compilation Raj Badhan (Wed Apr 14 2004 - 06:59:34 CDT)
- Re: AMBER: Amber and Linux compilation Raj Badhan (Wed Apr 14 2004 - 07:54:54 CDT)
- Re: Re: AMBER: Amber and Linux compilation Ye Mei (Wed Apr 14 2004 - 08:26:40 CDT)
- Re: Re: AMBER: Amber and Linux compilation Raj Badhan (Wed Apr 14 2004 - 09:17:18 CDT)
- Re: Re: AMBER: Amber and Linux compilation Andreas Svrcek-Seiler (Wed Apr 14 2004 - 09:44:21 CDT)
- Re: Re: AMBER: Amber and Linux compilation Teletchéa Stéphane (Wed Apr 14 2004 - 10:08:29 CDT)
- Re: AMBER: Amber and Linux compilation Ye Mei (Wed Apr 14 2004 - 06:52:55 CDT)
- AMBER: salt concentration cailliez (Wed Apr 14 2004 - 09:45:44 CDT)
- AMBER: atomicfluct in ptraj Qiang Lu (Wed Apr 14 2004 - 13:12:06 CDT)
- AMBER: Time to minimize the energy by NMODE xiaowei li (Wed Apr 14 2004 - 13:23:02 CDT)
- AMBER: gibbs termination Carsten Detering (Wed Apr 14 2004 - 14:17:29 CDT)
- Re: AMBER: gibbs termination Bill Ross (Wed Apr 14 2004 - 15:16:50 CDT)
- AMBER: xleap bug? Carsten Detering (Wed Apr 14 2004 - 17:28:07 CDT)
- AMBER: Problem in loading a PDB file in Leap - Please help me Mike (Thu Apr 15 2004 - 01:25:07 CDT)
- Re: AMBER: Problem in loading a PDB file in Leap - Please help me tim (Thu Apr 15 2004 - 00:53:41 CDT)
- Re: AMBER: Problem in loading a PDB file in Leap - Please help me Bill Ross (Sat Apr 17 2004 - 00:55:43 CDT)
- Re: AMBER: Problem in loading a PDB file in Leap - Please help me Bill Ross (Sat Apr 17 2004 - 14:40:06 CDT)
- AMBER: ptraj-6.5 cailliez (Thu Apr 15 2004 - 04:42:36 CDT)
- AMBER: pbsa Chenglong Li (Thu Apr 15 2004 - 12:26:51 CDT)
- AMBER: distance measurement in carnal and ptraj anshul_at_imtech.res.in (Fri Apr 16 2004 - 15:56:33 CDT)
- AMBER: new atom and increase the number of bonds Tomas Hrobarik (Fri Apr 16 2004 - 09:01:56 CDT)
- AMBER: compiling Amber 8 Beale, John (Fri Apr 16 2004 - 12:23:23 CDT)
- RE: AMBER: compiling Amber 8 Ross Walker (Fri Apr 16 2004 - 13:47:36 CDT)
- AMBER: Do we have to optimize the structure in order to do MEP Calculations? Ilyas Yildirim (Mon Apr 19 2004 - 15:35:45 CDT)
- Re: AMBER: Do we have to optimize the structure in order to do MEP Calculations? David A. Case (Mon Apr 19 2004 - 16:45:34 CDT)
- Re: AMBER: Do we have to optimize the structure in order to do MEP Calculations? Ilyas Yildirim (Tue Apr 20 2004 - 15:13:09 CDT)
- Re: AMBER: Do we have to optimize the structure in order to do MEP Calculations? David A. Case (Tue Apr 20 2004 - 15:29:47 CDT)
- Re: AMBER: Do we have to optimize the structure in order to do MEP Calculations? Ilyas Yildirim (Tue Apr 20 2004 - 15:51:55 CDT)
- Re: AMBER: Do we have to optimize the structure in order to do MEP Calculations? David A. Case (Tue Apr 20 2004 - 16:50:42 CDT)
- Re: AMBER: Do we have to optimize the structure in order to do MEP Calculations? Ilyas Yildirim (Tue Apr 20 2004 - 18:42:34 CDT)
- AMBER: What kind of informations are needed in a .pdb file in order to start using antechamber? Ilyas Yildirim (Wed Apr 21 2004 - 23:51:40 CDT)
- RE: AMBER: What kind of informations are needed in a .pdb file in order to start using antechamber? Chris Moth (Thu Apr 22 2004 - 07:02:30 CDT)
- Re: AMBER: Do we have to optimize the structure in order to do MEP Calculations? Ilyas Yildirim (Tue Apr 20 2004 - 15:28:13 CDT)
- AMBER: Do we have to optimize the structure in order to do MEP Calculations? Ilyas Yildirim (Mon Apr 19 2004 - 15:35:45 CDT)
- RE: AMBER: compiling Amber 8 Bill Ross (Fri Apr 16 2004 - 14:36:44 CDT)
- RE: AMBER: compiling Amber 8 Bill Ross (Fri Apr 16 2004 - 14:45:06 CDT)
- RE: AMBER: compiling Amber 8 Ross Walker (Fri Apr 16 2004 - 13:47:36 CDT)
- Re: AMBER: distance measurement in carnal and ptraj Bill Ross (Fri Apr 16 2004 - 13:32:07 CDT)
- AMBER: free energy perturbation questions hj zou (Sat Apr 17 2004 - 09:38:28 CDT)
- AMBER: loading PDB problem in leap Suwipa saen-oon (Sun Apr 18 2004 - 04:35:35 CDT)
- AMBER: xleap console message Guanglei Cui (Mon Apr 19 2004 - 10:06:05 CDT)
- AMBER: Intel Fortran Compiler, 7.1 status Robert Duke (Mon Apr 19 2004 - 10:32:49 CDT)
- AMBER: ptraj projections help Thomas C. Bishop (Mon Apr 19 2004 - 12:41:08 CDT)
- AMBER: memory problem in NMODE xhu1_at_memphis.edu (Mon Apr 19 2004 - 15:06:46 CDT)
- AMBER: nucgen generated RNA duplex: leap problems Arvind (Tue Apr 20 2004 - 06:44:37 CDT)
- AMBER: Simulation of lipid bilayers Greg Jezierski (Tue Apr 20 2004 - 09:41:50 CDT)
- AMBER: "No radius found for F" error and vdw radii for F in MMPBSA Ming Lei (Tue Apr 20 2004 - 10:47:40 CDT)
- AMBER: instalation of amber7 on SUN anshul_at_imtech.res.in (Tue Apr 20 2004 - 21:53:20 CDT)
- AMBER: Using pbsa Thomas Steinbrecher (Tue Apr 20 2004 - 18:16:37 CDT)
- AMBER: distance dependent dielectric anshul_at_imtech.res.in (Wed Apr 21 2004 - 10:30:49 CDT)
- AMBER: Question about compiling PMEMD Tod Pascal (Wed Apr 21 2004 - 02:21:40 CDT)
- AMBER: Turning off non-bond interactions david.evans_at_ulsop.ac.uk (Wed Apr 21 2004 - 03:22:21 CDT)
- RE: AMBER: Turning off non-bond interactions Chris Moth (Wed Apr 21 2004 - 10:00:14 CDT)
- RE: AMBER: Turning off non-bond interactions Chris Moth (Wed Apr 21 2004 - 10:58:07 CDT)
- Re: AMBER: Turning off non-bond interactions David A. Case (Wed Apr 21 2004 - 10:54:54 CDT)
- RE: AMBER: Turning off non-bond interactions Bill Ross (Wed Apr 21 2004 - 13:09:44 CDT)
- AMBER: How to solve these warnings? Xiao He (Wed Apr 21 2004 - 03:37:40 CDT)
- AMBER: Why are there LENNARD_JONES_COEF A,B zero Xiao He (Wed Apr 21 2004 - 03:46:29 CDT)
- Re: AMBER: Why are there LENNARD_JONES_COEF A,B zero Dr. Yong Duan (Wed Apr 21 2004 - 07:56:19 CDT)
- Re: AMBER: Why are there LENNARD_JONES_COEF A,B zero David A. Case (Wed Apr 21 2004 - 10:57:26 CDT)
- Re: Re: AMBER: Why are there LENNARD_JONES_COEF A,B zero Xiao He (Wed Apr 21 2004 - 08:05:49 CDT)
- Re: Re: AMBER: Why are there LENNARD_JONES_COEF A,B zero Jiten (Wed Apr 21 2004 - 08:28:26 CDT)
- Re: Re: AMBER: Why are there LENNARD_JONES_COEF A,B zero Dr. Yong Duan (Wed Apr 21 2004 - 09:41:59 CDT)
- Re: Re: Re: AMBER: Why are there LENNARD_JONES_COEF A,B zero Xiao He (Wed Apr 21 2004 - 08:48:06 CDT)
- Re: Re: Re: AMBER: Why are there LENNARD_JONES_COEF A,B zero Dr. Yong Duan (Wed Apr 21 2004 - 10:59:58 CDT)
- Re: Re: AMBER: Why are there LENNARD_JONES_COEF A,B zero Xiao He (Wed Apr 21 2004 - 08:05:49 CDT)
- AMBER: non-periodic simulation and box information !! Pradipta Bandyopadhyay (Wed Apr 21 2004 - 10:56:31 CDT)
- AMBER: rdparm: a parameter array overflowed Wen Li (Wed Apr 21 2004 - 11:04:17 CDT)
- Re: AMBER: How to solve these warnings? Bill Ross (Wed Apr 21 2004 - 13:21:30 CDT)
- Re: AMBER: nucgen generated RNA duplex: leap problems Bill Ross (Wed Apr 21 2004 - 13:33:00 CDT)
- AMBER: gaff "ha" atom type Oliver Hucke (Wed Apr 21 2004 - 15:38:20 CDT)
- AMBER: restraintmask and ambmask Oliver Hucke (Wed Apr 21 2004 - 19:17:24 CDT)
- AMBER: Bond type in leap anshul_at_imtech.res.in (Thu Apr 22 2004 - 14:22:31 CDT)
- AMBER: mm_pbsa examples; delphi in mm_pbsa Kazuo Koyano (Thu Apr 22 2004 - 03:34:03 CDT)
- AMBER: antechamber bcctype.c typo Chris Moth (Thu Apr 22 2004 - 07:07:32 CDT)
- AMBER: Euclidean distances Wen Li (Thu Apr 22 2004 - 09:49:45 CDT)
- Re: AMBER: Euclidean distances Bill Ross (Thu Apr 22 2004 - 11:34:37 CDT)
- Re: AMBER: Bond type in leap Bill Ross (Thu Apr 22 2004 - 11:53:33 CDT)
- AMBER: MD for protein-carbohydrate complex Mikyung Seo (Thu Apr 22 2004 - 15:03:33 CDT)
- Re: AMBER: MD for protein-carbohydrate complex Bill Ross (Thu Apr 22 2004 - 15:03:54 CDT)
- AMBER: protein-carbohydrate complex Mikyung Seo (Thu Apr 22 2004 - 17:27:31 CDT)
- Re: AMBER: protein-carbohydrate complex Bill Ross (Thu Apr 22 2004 - 17:39:16 CDT)
- AMBER: solvateCap warning Helios Chen (Fri Apr 23 2004 - 04:47:25 CDT)
- AMBER: partition error in shake Guanglei Cui (Fri Apr 23 2004 - 10:18:19 CDT)
- AMBER: pmemd and mpich - myrinet Lubos Vrbka (Fri Apr 23 2004 - 10:59:31 CDT)
- Re: AMBER: pmemd and mpich - myrinet Robert Duke (Fri Apr 23 2004 - 11:23:37 CDT)
- Re: AMBER: pmemd and mpich - myrinet Lubos Vrbka (Fri Apr 23 2004 - 12:33:32 CDT)
- Re: AMBER: pmemd and mpich - myrinet Lubos Vrbka (Sat Apr 24 2004 - 05:50:02 CDT)
- Re: AMBER: pmemd and mpich - myrinet Robert Duke (Sat Apr 24 2004 - 07:31:59 CDT)
- Re: AMBER: pmemd and mpich - myrinet Lubos Vrbka (Sat Apr 24 2004 - 16:18:11 CDT)
- AMBER: Optimizing a structure and the interpretation of it Ilyas Yildirim (Sat Apr 24 2004 - 18:08:14 CDT)
- Re: AMBER: Optimizing a structure and the interpretation of it Kazuo Koyano (Mon Apr 26 2004 - 00:14:25 CDT)
- AMBER: PMEMD scaling Lubos Vrbka (Sun Apr 25 2004 - 09:07:43 CDT)
- Re: AMBER: PMEMD scaling Robert Duke (Sun Apr 25 2004 - 10:24:11 CDT)
- Re: AMBER: pmemd and mpich - myrinet Lubos Vrbka (Tue Apr 27 2004 - 09:58:25 CDT)
- Re: AMBER: pmemd and mpich - myrinet Robert Duke (Fri Apr 23 2004 - 11:23:37 CDT)
- AMBER: Parameters for nonpolar contribution to solvation Thomas Steinbrecher (Fri Apr 23 2004 - 12:48:42 CDT)
- AMBER: parameters for neutral Arg Mikyung Seo (Fri Apr 23 2004 - 15:51:14 CDT)
- AMBER: compile amber8 in linux with ifort quch quch (Fri Apr 23 2004 - 16:08:05 CDT)
- AMBER: Antechamber: problems with bcc correction Oliver Hucke (Fri Apr 23 2004 - 17:08:47 CDT)
- AMBER: "matrix" in ptraj Sichun Yang (Fri Apr 23 2004 - 20:19:28 CDT)
- AMBER: NSNB parameter Helios Chen (Fri Apr 23 2004 - 22:45:42 CDT)
- AMBER: tutorial of Biotin/Streptavidin Helios Chen (Sat Apr 24 2004 - 08:37:43 CDT)
- AMBER: universal recognition of chemicals Ioana Cozmuta (Mon Apr 26 2004 - 17:15:55 CDT)
- AMBER: PARMSCAN Sergio Emanuel Galembeck (Mon Apr 26 2004 - 13:29:05 CDT)
- AMBER: overlap between HE and OE in GLH Hailong Lin (Mon Apr 26 2004 - 10:49:36 CDT)
- AMBER: neutral residues Mikyung Seo (Mon Apr 26 2004 - 11:33:04 CDT)
- AMBER: Titratable amino acid termini Sarah Harris (Tue Apr 27 2004 - 04:43:16 CDT)
- AMBER: AMBER Gibbs Memory problem Jiten (Tue Apr 27 2004 - 11:01:09 CDT)
- AMBER: amber8 performance on linux cluster quch quch (Tue Apr 27 2004 - 12:05:45 CDT)
- AMBER: xleap don't recognize formaldehyde? scopio (Tue Apr 27 2004 - 09:53:00 CDT)
- AMBER: PMEMD and ifort 8 update Robert Duke (Tue Apr 27 2004 - 13:08:05 CDT)
- AMBER: Additional note on ld.so.conf vs. LD_LIBRARY_PATH Robert Duke (Tue Apr 27 2004 - 13:29:35 CDT)
- AMBER: %GIBBS-F-MISMATCH, The parm and coord files disagree on the number of atoms Jiten (Tue Apr 27 2004 - 21:29:25 CDT)
- AMBER: question on simulated annealing Venkata S Koppuravuri (Wed Apr 28 2004 - 11:00:39 CDT)
- AMBER: questions about NMODE xhu1_at_memphis.edu (Wed Apr 28 2004 - 12:43:34 CDT)
- Re: AMBER: questions about NMODE David A. Case (Wed Apr 28 2004 - 14:06:01 CDT)
- Re: AMBER: questions about NMODE xhu1_at_memphis.edu (Wed Apr 28 2004 - 16:47:18 CDT)
- Re: AMBER: questions about NMODE xhu1_at_memphis.edu (Wed Apr 28 2004 - 18:04:04 CDT)
- Re: AMBER: questions about NMODE xhu1_at_memphis.edu (Thu Apr 29 2004 - 13:11:41 CDT)
- Re: AMBER: questions about NMODE xhu1_at_memphis.edu (Thu Apr 29 2004 - 18:34:08 CDT)
- AMBER: a general question about the mmpbsa method a b (Wed Apr 28 2004 - 22:51:00 CDT)
- AMBER: mm_pbsa question: MAXAT=10000 exceeded Fang, Jianwen (Wed Apr 28 2004 - 23:48:09 CDT)
- AMBER: VS: mmpbsa question Olayiwola Adekoya (Thu Apr 29 2004 - 04:32:32 CDT)
- AMBER: Redhat install Helios Chen (Thu Apr 29 2004 - 09:24:17 CDT)
- AMBER: CHARMM PSF to PRMTOP Gabbar Daaku (Thu Apr 29 2004 - 16:42:33 CDT)
- AMBER: Angle Restraining Pooja Narang (Fri Apr 30 2004 - 02:17:30 CDT)
- AMBER: just sander not run Helios Chen (Fri Apr 30 2004 - 04:27:45 CDT)
- AMBER: energy criteria. anshul_at_imtech.res.in (Fri Apr 30 2004 - 15:51:04 CDT)
- AMBER: Amber8 compilation error Arvind (Fri Apr 30 2004 - 12:04:02 CDT)
- AMBER: esp or resp for all_amino94.lib Mikyung Seo (Fri Apr 30 2004 - 18:06:54 CDT)
- AMBER: problem for compiling amber7 by ifc8 scopio (Sat May 01 2004 - 07:26:57 CDT)
- AMBER: Gibbs and solvent caps Sébastien Osborne (Sat May 01 2004 - 13:59:07 CDT)
- AMBER: ptraj: radius of gyration Sichun Yang (Sat May 01 2004 - 21:50:37 CDT)
- AMBER: xleap problem hj zou (Sun May 02 2004 - 08:49:40 CDT)
- AMBER: nmode analysis sebnem (Sun May 02 2004 - 19:52:12 CDT)
- AMBER: any program or tool Helios Chen (Mon May 03 2004 - 05:16:15 CDT)
- AMBER: some bugfixes David A. Case (Mon May 03 2004 - 13:10:47 CDT)
- AMBER: resp demo files Kristy Mardis (Mon May 03 2004 - 14:29:45 CDT)
- AMBER: why delete water molecule Helios Chen (Mon May 03 2004 - 23:18:49 CDT)
- AMBER: separate the longitudinal and transverse vibrations frequencies xiaowei li (Mon May 03 2004 - 23:33:11 CDT)
- AMBER: Troubles in the NTP simulation: "vlimit exceeded". Ülo Lille (Tue May 04 2004 - 05:16:24 CDT)
- AMBER: PMF correction factor Harvey, David Richard (Tue May 04 2004 - 08:35:13 CDT)
- AMBER: How to choose force constant? tomjas_at_poczta.onet.pl (Tue May 04 2004 - 08:48:44 CDT)
- AMBER: Normal Mode Analysis possibility myang (Tue May 04 2004 - 10:52:05 CDT)
- Re: AMBER: Troubles in the NTP simulation: "vlimit exceeded". Bill Ross (Tue May 04 2004 - 11:44:16 CDT)
- AMBER: reproduction of RESP charges for Gly Mikyung Seo (Tue May 04 2004 - 12:51:01 CDT)
- AMBER: problem with MM/PBSA Itziar Maestre Asenjo (Tue May 04 2004 - 11:38:32 CDT)
- AMBER: antechamber Guanglei Cui (Tue May 04 2004 - 21:49:28 CDT)
- AMBER: methane box anshul_at_imtech.res.in (Wed May 05 2004 - 13:57:16 CDT)
- AMBER: ptraj analyze matrix entropy Marcin Krol (Wed May 05 2004 - 04:19:32 CDT)
- Re: AMBER: ptraj analyze matrix entropy Holger Gohlke (Wed May 05 2004 - 05:28:57 CDT)
- Re: AMBER: ptraj analyze matrix entropy Marcin Krol (Thu May 06 2004 - 08:48:02 CDT)
- Re: AMBER: ptraj analyze matrix entropy David A. Case (Thu May 06 2004 - 10:29:30 CDT)
- Re: AMBER: ptraj analyze matrix entropy Holger Gohlke (Mon May 17 2004 - 13:05:57 CDT)
- Re: AMBER: ptraj analyze matrix entropy David A. Case (Mon May 17 2004 - 14:36:41 CDT)
- AMBER: Nonplanar ring systems in nucleic acid Ilyas Yildirim (Wed May 19 2004 - 15:14:14 CDT)
- Re: AMBER: Nonplanar ring systems in nucleic acid darden (Wed May 19 2004 - 16:05:59 CDT)
- Re: AMBER: Nonplanar ring systems in nucleic acid Jiri Sponer (Thu May 20 2004 - 07:42:16 CDT)
- Re: AMBER: Nonplanar ring systems in nucleic acid Jiri Sponer (Thu May 20 2004 - 06:46:41 CDT)
- Re: AMBER: ptraj analyze matrix entropy David A. Case (Thu May 06 2004 - 10:29:30 CDT)
- AMBER: H Bonds anshul_at_imtech.res.in (Wed May 05 2004 - 15:07:01 CDT)
- AMBER: Implicit solvents anshul_at_imtech.res.in (Wed May 05 2004 - 15:10:20 CDT)
- AMBER: reorientation in R.E.D Mikyung Seo (Wed May 05 2004 - 11:38:01 CDT)
- AMBER: antechamber gives GDP 0 charge Raik Grünberg (Wed May 05 2004 - 15:17:53 CDT)
- Re: AMBER: H Bonds Bill Ross (Wed May 05 2004 - 16:18:22 CDT)
- AMBER: Solvent accessible surface area(LCPO) computation Sunil_Koovakkat_at_berlex.com (Wed May 05 2004 - 16:51:59 CDT)
- AMBER: Sander klambda question Linda Prengaman (Wed May 05 2004 - 17:14:22 CDT)
- AMBER: simulated anealing ...vlimit exceed anshul_at_imtech.res.in (Thu May 06 2004 - 16:50:35 CDT)
- AMBER: Possible amber8 antechamber PDB parsing bug Mark Williamson (Thu May 06 2004 - 10:16:19 CDT)
- AMBER: ions in mm_pbsa Fang, Jianwen (Thu May 06 2004 - 10:30:12 CDT)
- FW: AMBER: ions in mm_pbsa S. Frank Yan (Thu May 06 2004 - 12:23:55 CDT)
- Re: AMBER: ions in mm_pbsa Thomas E. Cheatham, III (Thu May 06 2004 - 14:07:42 CDT)
- AMBER: reference with ptraj John (Thu May 06 2004 - 14:50:48 CDT)
- Re: AMBER: reference with ptraj Thomas E. Cheatham, III (Thu May 06 2004 - 15:11:58 CDT)
- Re: AMBER: reference with ptraj Bill Ross (Thu May 06 2004 - 17:05:55 CDT)
- Re: AMBER: reference with ptraj Thomas E. Cheatham, III (Thu May 06 2004 - 17:12:18 CDT)
- Re: AMBER: reference with ptraj Fernandez-Carmona Juan (Fri May 07 2004 - 01:27:53 CDT)
- AMBER: reference with ptraj John (Thu May 06 2004 - 14:50:48 CDT)
- AMBER: Ligand from CCDC. Osman Gani (Thu May 06 2004 - 10:38:16 CDT)
- AMBER: Possible amber8 antechamber PDB parsing bug Junmei Wang (Thu May 06 2004 - 12:09:30 CDT)
- AMBER: Computing psec/day using Amber 8 Craig TOEPFER (Thu May 06 2004 - 13:21:53 CDT)
- AMBER: Opteron PMEMD Gary Waters (Thu May 06 2004 - 13:29:56 CDT)
- AMBER: cap waters always flexible? Oliver Hucke (Thu May 06 2004 - 15:41:19 CDT)
- AMBER: choosing 3 atoms for reorientaion in R.E.D Mikyung Seo (Thu May 06 2004 - 16:38:19 CDT)
- AMBER: solvent cap and eedmeth Oliver Hucke (Thu May 06 2004 - 18:31:42 CDT)
- AMBER: ptraj analyze matrix entropy Marcin Krol (Fri May 07 2004 - 03:01:23 CDT)
- AMBER: hbond in ptraj Qiang Lu (Fri May 07 2004 - 13:43:33 CDT)
- AMBER: Charges and atom type anshul_at_imtech.res.in (Sat May 08 2004 - 16:06:25 CDT)
- AMBER: what is its file format ? scopio (Sat May 08 2004 - 09:13:21 CDT)
- AMBER: ligand minimization atobak_at_eden.rutgers.edu (Sat May 08 2004 - 16:13:21 CDT)
- AMBER: MD with NTR + NMROPT Martin Fabani (Mon May 10 2004 - 03:56:28 CDT)
- AMBER: HIS protonation Stefano.Pieraccini_at_unimi.it (Mon May 10 2004 - 04:50:40 CDT)
- AMBER: ptraj read in matrix Marcin Krol (Mon May 10 2004 - 06:57:25 CDT)
- AMBER: Carnal question opitz_at_che.udel.edu (Mon May 10 2004 - 10:08:18 CDT)
- AMBER: A parm file suit for half beta and half alpha structure Qiang Lu (Mon May 10 2004 - 13:51:57 CDT)
- AMBER: question about mm-pbsa aini_at_UMDNJ.EDU (Mon May 10 2004 - 19:10:05 CDT)
- AMBER: what does EAMBER stand for? scopio (Mon May 10 2004 - 20:08:35 CDT)
- AMBER: mm-pbsa:- atom charges and radii ? Jeffrey Dyason (Tue May 11 2004 - 03:07:12 CDT)
- AMBER: gaussian03 output in antechamber Stefano.Pieraccini_at_unimi.it (Tue May 11 2004 - 04:27:46 CDT)
- AMBER: PMEMD Built ? Wont run.. Gary Waters (Tue May 11 2004 - 11:00:33 CDT)
- AMBER: ptraj and LES Guanglei Cui (Tue May 11 2004 - 16:00:12 CDT)
- AMBER: AMBER charges(Cornell et al JACS, 1995) and R.E.D Mikyung Seo (Tue May 11 2004 - 17:51:01 CDT)
- Re: AMBER: AMBER charges(Cornell et al JACS, 1995) and R.E.D FyD (Wed May 12 2004 - 11:42:31 CDT)
- RE: AMBER: AMBER charges(Cornell et al JACS, 1995) and R.E.D FyD (Wed May 12 2004 - 13:01:31 CDT)
- Re: AMBER: AMBER charges(Cornell et al JACS, 1995) and R.E.D Piotr Cieplak (Wed May 12 2004 - 13:57:20 CDT)
- AMBER: dummy atom other than H Carsten Detering (Tue May 11 2004 - 20:12:22 CDT)
- AMBER: Problem : antechamber produces no output Marc Perea (Tue May 11 2004 - 05:19:52 CDT)
- AMBER: gaussian03 output in antechamber Stefano.Pieraccini_at_unimi.it (Wed May 12 2004 - 03:46:17 CDT)
- AMBER: shake option in sander Lishan Yao (Wed May 12 2004 - 08:32:48 CDT)
- AMBER: dihedral driver Beale, John (Wed May 12 2004 - 08:58:35 CDT)
- AMBER: performance of periodic vs. non-periodic simulation Oliver Hucke (Wed May 12 2004 - 14:08:18 CDT)
- AMBER: tmd questions hj zou (Wed May 12 2004 - 21:07:36 CDT)
- AMBER: antechamber/Mopac: strange GTP charges Raik Grünberg (Thu May 13 2004 - 12:57:06 CDT)
- AMBER: sander_classic for cap simulations? Oliver Hucke (Thu May 13 2004 - 17:43:36 CDT)
- AMBER: Decomposition in MMPBSA Thomas Steinbrecher (Thu May 13 2004 - 19:15:03 CDT)
- AMBER: FAD cofactor. Osman Gani (Fri May 14 2004 - 04:34:28 CDT)
- AMBER: Converting ORAC's topology file to AMBER's prepi file scopio (Fri May 14 2004 - 07:30:32 CDT)
- AMBER: Simulated annealing ...vlimit problem Venkata S Koppuravuri (Fri May 14 2004 - 09:22:44 CDT)
- Re: AMBER: Simulated annealing ...vlimit problem David A. Case (Sat May 15 2004 - 11:14:06 CDT)
- Re: AMBER: Simulated annealing ...vlimit problem anshul_at_imtech.res.in (Sun May 16 2004 - 15:01:55 CDT)
- AMBER: questions on mm_pbsa Fang, Jianwen (Fri May 14 2004 - 13:49:54 CDT)
- AMBER: solvents reference. Herbert Georg (Fri May 14 2004 - 14:56:38 CDT)
- AMBER: antechamber anshul_at_imtech.res.in (Sat May 15 2004 - 11:43:48 CDT)
- AMBER: install RESP Gustavo Pierdominici Sottile (Sat May 15 2004 - 06:54:41 CDT)
- AMBER: installing RESP Gustavo Pierdominici Sottile (Sat May 15 2004 - 06:52:59 CDT)
- AMBER: energy conservation with GB !! Pradipta Bandyopadhyay (Sun May 16 2004 - 01:27:01 CDT)
- AMBER: parametrizacion partial charges Gustavo Pierdominici Sottile (Mon May 17 2004 - 08:45:58 CDT)
- AMBER: why EGB = nan Fang, Jianwen (Mon May 17 2004 - 09:54:44 CDT)
- AMBER: Gustavo Pierdominici Sottile (Mon May 17 2004 - 13:38:53 CDT)
- AMBER: Treating atom type LP the same as EP Sarah Wittkopp (Mon May 17 2004 - 14:16:20 CDT)
- AMBER: thermodynamic integration of ring opening Carsten Detering (Mon May 17 2004 - 15:37:42 CDT)
- Re: AMBER: thermodynamic integration of ring opening Bill Ross (Mon May 17 2004 - 17:47:24 CDT)
- AMBER: single amino acid energy Helios Chen (Tue May 18 2004 - 03:15:02 CDT)
- AMBER: PCA prep file Majid moghaddam (Tue May 18 2004 - 03:19:26 CDT)
- AMBER: CAP PROTOCOL SIMULATION Obdulia Rabal (Tue May 18 2004 - 04:32:29 CDT)
- AMBER: Clean in RESP Gustavo Pierdominici Sottile (Tue May 18 2004 - 06:46:38 CDT)
- AMBER: DEBUG and GB Jones, Garth A (Tue May 18 2004 - 07:02:32 CDT)
- AMBER: NTT=4 Joachim Reichelt (Tue May 18 2004 - 09:30:33 CDT)
- AMBER: IGR1/grnam1 problem Marcin Krol (Tue May 18 2004 - 12:40:58 CDT)
- AMBER: PB bomb in pb_saarc S. Frank Yan (Tue May 18 2004 - 15:41:41 CDT)
- AMBER: average structure from traj Holly Freedman (Tue May 18 2004 - 16:30:07 CDT)
- AMBER: Removal of rotation: Flying ice cube koby levy (Tue May 18 2004 - 19:23:54 CDT)
- AMBER: rmsd over residues using ptraj Qiang Lu (Tue May 18 2004 - 19:41:16 CDT)
- Re: AMBER: rmsd over residues using ptraj Bill Ross (Tue May 18 2004 - 19:57:54 CDT)
- AMBER: Does this warning matter? (about improper torsion parameters) J. Zhang, Dr (Tue May 18 2004 - 22:04:32 CDT)
- AMBER: Reproducing the energy during restart in MD! Pradipta Bandyopadhyay (Wed May 19 2004 - 01:33:27 CDT)
- AMBER: problem in antechamber Suwipa saen-oon (Wed May 19 2004 - 03:27:24 CDT)
- AMBER: ptraj bug? Ian Withers (Wed May 19 2004 - 09:33:38 CDT)
- AMBER: address error Carsten Detering (Wed May 19 2004 - 12:09:12 CDT)
- Re: Re[2]: AMBER: rmsd over residues using ptraj Bill Ross (Wed May 19 2004 - 13:34:08 CDT)
- Re: Re[4]: AMBER: rmsd over residues using ptraj Bill Ross (Wed May 19 2004 - 16:15:01 CDT)
- AMBER: parallel installation problem Oliver Hucke (Wed May 19 2004 - 17:17:08 CDT)
- AMBER: amber7, namelist, xlf and osx Knut Langsetmo (Wed May 19 2004 - 17:47:26 CDT)
- AMBER: Amber8 on Tru64 UNIX on Alpha systems Jiten (Wed May 19 2004 - 20:28:50 CDT)
- AMBER: instalation of RES anshul_at_imtech.res.in (Thu May 20 2004 - 13:22:08 CDT)
- AMBER: SHAKE in thermodynamic integration by way of riccardo nifosi (Thu May 20 2004 - 05:38:21 CDT)
- AMBER: pbsa calculation on part of the molecule S. Frank Yan (Thu May 20 2004 - 15:25:46 CDT)
- AMBER: Ammonia Lishan Yao (Thu May 20 2004 - 16:11:43 CDT)
- AMBER: PF6- force field parameters Jiten (Thu May 20 2004 - 19:32:29 CDT)
- RE: AMBER: pbsa calculation on part of the molecule & nmode analysis S. Frank Yan (Thu May 20 2004 - 20:06:11 CDT)
- AMBER: Problem compiling amber7 Miguel (Fri May 21 2004 - 04:15:10 CDT)
- Re: AMBER: Problem compiling amber7 David A. Case (Fri May 21 2004 - 10:23:09 CDT)
- Re: AMBER: Problem compiling amber7 Viktor Hornak (Mon May 24 2004 - 10:19:04 CDT)
- Re: AMBER: Problem compiling amber7 Miguel (Tue May 25 2004 - 04:54:55 CDT)
- Re: AMBER: Problem compiling amber7 scopio (Tue May 25 2004 - 07:15:28 CDT)
- Re: AMBER: Problem compiling amber7 Andreas Svrcek-Seiler (Tue May 25 2004 - 07:21:40 CDT)
- Re: AMBER: Problem compiling amber7 Viktor Hornak (Tue May 25 2004 - 07:20:40 CDT)
- Re: AMBER: Problem compiling amber7 Joachim Reichelt (Tue May 25 2004 - 07:27:59 CDT)
- Re: AMBER: Problem compiling amber7 Miguel (Tue May 25 2004 - 04:54:55 CDT)
- AMBER: NHE problem Ryan Ye (Sat May 22 2004 - 00:36:44 CDT)
- AMBER: a question about Van der waals radius Xiao He (Sat May 22 2004 - 07:07:05 CDT)
- Re: AMBER: a question about Van der waals radius Jiri Sponer (Sat May 22 2004 - 07:41:12 CDT)
- Re: Re: AMBER: a question about Van der waals radius Xiao He (Sat May 22 2004 - 08:55:05 CDT)
- Re: Re: AMBER: a question about Van der waals radius Jiri Sponer (Sat May 22 2004 - 09:09:46 CDT)
- Re: Re: Re: AMBER: a question about Van der waals radius Xiao He (Sat May 22 2004 - 09:29:56 CDT)
- Re: Re: Re: AMBER: a question about Van der waals radius Jiri Sponer (Sat May 22 2004 - 09:42:27 CDT)
- Re: Re: Re: Re: AMBER: a question about Van der waals radius Xiao He (Sat May 22 2004 - 10:01:28 CDT)
- Re: Re: Re: Re: Re: AMBER: a question about Van der waals radius Ye Mei (Mon May 24 2004 - 01:54:30 CDT)
- Re: Re: AMBER: a question about Van der waals radius Xiao He (Sat May 22 2004 - 08:55:05 CDT)
- Re: AMBER: a question about Van der waals radius Jiri Sponer (Sat May 22 2004 - 07:41:12 CDT)
- AMBER: parallel installation problem Oliver Hucke (Sat May 22 2004 - 19:40:17 CDT)
- AMBER: h bond Ye Mei (Mon May 24 2004 - 01:27:37 CDT)
- AMBER: performance of amber7/xlf/macosX 10.3 with JAC on xserve g5@2.0GHz Tru Huynh (Mon May 24 2004 - 02:45:39 CDT)
- AMBER: Free energies using Sander in Amber8 Jiten (Mon May 24 2004 - 21:52:52 CDT)
- AMBER: IOUTFM and binary/unformatted files error Martin Mucha (Tue May 25 2004 - 02:18:44 CDT)
- AMBER: Installation AMber 8: "cannot find -lU77" A. Hungie (Tue May 25 2004 - 08:21:09 CDT)
- AMBER: mm_pbsa energy decomposition error Fang, Jianwen (Tue May 25 2004 - 09:40:32 CDT)
- AMBER: Compiling AMBER MPI program using GCC/G77 compiler and MPICH on AMD OPTERON 64 Ming Lei (Tue May 25 2004 - 10:27:49 CDT)
- AMBER: Scaling nb between groups Marcin Krol (Tue May 25 2004 - 10:34:00 CDT)
- AMBER: ptraj Holly Freedman (Tue May 25 2004 - 11:16:42 CDT)
- AMBER: A problem for compiling amber8 parallel version Chen Yongzhi (Tue May 25 2004 - 15:58:37 CDT)
- AMBER: protein is out of the water box Feng, Hanqiao (NIH/NCI) (Tue May 25 2004 - 17:35:01 CDT)
- AMBER: Cannot read in sander bybaker_at_itsa.ucsf.edu (Tue May 25 2004 - 17:51:48 CDT)
- AMBER: Amber 8 compilation A. Hungie (Wed May 26 2004 - 11:23:07 CDT)
- AMBER: types of water atom Gustavo Pierdominici Sottile (Wed May 26 2004 - 12:06:16 CDT)
- Re: AMBER: types of water atom Piotr Cieplak (Wed May 26 2004 - 12:28:17 CDT)
- AMBER: amber 8 under windows XP Adrian E. Roitberg (Wed May 26 2004 - 13:50:02 CDT)
- Re: AMBER: amber 8 under windows XP Piotr Cieplak (Wed May 26 2004 - 17:08:38 CDT)
- AMBER: xleap solvatebox problem Tomas Kubar (Thu May 27 2004 - 07:33:44 CDT)
- AMBER: antechamber: atomtype assignment of cc/cd etc pairs in GAFF / creating atom type definition file Kamp, Marc vander (Thu May 27 2004 - 08:01:13 CDT)
- AMBER: pdb in RED Gustavo Pierdominici Sottile (Thu May 27 2004 - 12:29:44 CDT)
- AMBER: Amber 7 (sander) use of PME Linda Prengaman (Thu May 27 2004 - 14:42:13 CDT)
- Re: AMBER: Cannot read in sander-again bybaker_at_itsa.ucsf.edu (Thu May 27 2004 - 16:22:00 CDT)
- Re: AMBER: Cannot read in sander-again Bill Ross (Thu May 27 2004 - 16:28:27 CDT)
- Re: AMBER: Cannot read in sander-again Guanglei Cui (Thu May 27 2004 - 16:28:39 CDT)
- Re: AMBER: Cannot read in sander-again bybaker_at_itsa.ucsf.edu (Thu May 27 2004 - 17:05:22 CDT)
- Re: AMBER: Cannot read in sander-again Bill Ross (Thu May 27 2004 - 17:16:56 CDT)
- Re: AMBER: Cannot read in sander-again David A. Case (Thu May 27 2004 - 18:15:37 CDT)
- AMBER: Re: CCL:Helical parameters extraction from trajectory Peter Gannett (Fri May 28 2004 - 06:47:08 CDT)
- AMBER: problems with mpich Amber admin (Fri May 28 2004 - 09:55:25 CDT)
- AMBER: amber on AMD 64 xhu1_at_memphis.edu (Fri May 28 2004 - 13:56:02 CDT)
- AMBER: Use of RED Gustavo Pierdominici Sottile (Fri May 28 2004 - 13:44:26 CDT)
- AMBER: torsion angles John (Fri May 28 2004 - 18:02:04 CDT)
- AMBER: Sander went through bybaker_at_itsa.ucsf.edu (Fri May 28 2004 - 19:19:02 CDT)
- AMBER: about amber8, replica exchange J. Zhang, Dr (Fri May 28 2004 - 22:45:49 CDT)
- AMBER: Low frequency in quasi-harmonic analysis!! Pradipta Bandyopadhyay (Sun May 30 2004 - 04:23:50 CDT)
- AMBER: MMPBSA problem Dalmaris, John (Sun May 30 2004 - 08:22:55 CDT)
- AMBER: question about NMODE for RNA xhu1_at_memphis.edu (Sun May 30 2004 - 17:32:22 CDT)
- AMBER: program compatibility hj zou (Sun May 30 2004 - 21:07:39 CDT)
- AMBER: FEP error/early termination - why? Annette Höglund (Mon May 31 2004 - 08:23:27 CDT)
- AMBER: Install Amber8 under cygwin Seonah Kim (Mon May 31 2004 - 20:35:16 CDT)
- AMBER: Software to visualize normal modes! Pradipta Bandyopadhyay (Mon May 31 2004 - 23:42:39 CDT)
- AMBER: Periodic boundary simulation Soon (Tue Jun 01 2004 - 04:08:31 CDT)
- AMBER: Free energy in Amber8 Jiten (Tue Jun 01 2004 - 05:11:54 CDT)
- AMBER: Heme parameters Gustavo Pierdominici Sottile (Tue Jun 01 2004 - 10:32:06 CDT)
- AMBER: Amber force field for protein-DNA system jz7_at_duke.edu (Tue Jun 01 2004 - 11:14:16 CDT)
- Re: AMBER: Amber force field for protein-DNA system Rhonda Torres (Tue Jun 01 2004 - 12:24:57 CDT)
- RE: AMBER: Amber force field for protein-DNA system Ross Walker (Tue Jun 01 2004 - 13:09:37 CDT)
- RE: AMBER: Amber force field for protein-DNA system Bill Ross (Tue Jun 01 2004 - 13:32:52 CDT)
- Re: AMBER: Amber force field for protein-DNA system David A. Case (Tue Jun 01 2004 - 13:40:15 CDT)
- AMBER: Amber force field for protein-DNA system (again) jz7_at_duke.edu (Tue Jun 01 2004 - 14:51:59 CDT)
- AMBER: sander8 performance Oliver Hucke (Tue Jun 01 2004 - 12:53:46 CDT)
- AMBER: Amber7: pdb format file vidit kumar (Tue Jun 01 2004 - 13:13:03 CDT)
- AMBER: sander of AMBER 8 doesn't work Feng, Hanqiao (NIH/NCI) (Tue Jun 01 2004 - 13:39:56 CDT)
- AMBER: RED Xin Hu (Tue Jun 01 2004 - 18:02:37 CDT)
- Re: [pradipta_b@mail.jnu.ac.in: AMBER: Software to visualize normal modes!] David A. Case (Tue Jun 01 2004 - 18:24:54 CDT)
- AMBER: Add Hydrogen bond through xLeap? Nan Lin (Wed Jun 02 2004 - 01:25:18 CDT)
- AMBER: question about replica exchange in amber8 J. Zhang, Dr (Wed Jun 02 2004 - 04:24:24 CDT)
- Re: AMBER: question about replica exchange in amber8 apw397_at_soton.ac.uk (Wed Jun 02 2004 - 04:43:21 CDT)
- Re: AMBER: question about replica exchange in amber8 Guanglei Cui (Wed Jun 02 2004 - 08:58:32 CDT)
- Re: AMBER: question about replica exchange in amber8 xiaolin cheng (Wed Jun 02 2004 - 09:23:30 CDT)
- Re: AMBER: question about replica exchange in amber8 J. Zhang, Dr (Wed Jun 02 2004 - 21:16:19 CDT)
- AMBER: Gaussian Interface ? Jiten (Wed Jun 02 2004 - 10:06:12 CDT)
- AMBER: Amber force field for protein-DNA system (again) jz7_at_duke.edu (Wed Jun 02 2004 - 12:31:56 CDT)
- AMBER: confusion about epsilon=4r for nmode calclation of nucleic acid xiaowei li (Wed Jun 02 2004 - 22:15:29 CDT)
- AMBER: simulated anealling anshul_at_imtech.res.in (Thu Jun 03 2004 - 09:12:55 CDT)
- AMBER: Simulated anealling anshul_at_imtech.res.in (Thu Jun 03 2004 - 09:30:42 CDT)
- AMBER: parallel Sander (amber8): run-time error under Irix Karol Miaskiewicz (Thu Jun 03 2004 - 09:42:25 CDT)
- Re: AMBER: parallel Sander (amber8): run-time error under Irix Carlos Simmerling (Thu Jun 03 2004 - 10:03:43 CDT)
- Re: AMBER: parallel Sander (amber8): run-time error under Irix Viktor Hornak (Thu Jun 03 2004 - 14:01:40 CDT)
- AMBER: Re: parallel Sander (amber8): run-time error under Irix Karol Miaskiewicz (Tue Jun 08 2004 - 15:04:14 CDT)
- AMBER: amber8 compile on Lemieux Guanglei Cui (Thu Jun 03 2004 - 10:06:21 CDT)
- AMBER: MMPBSA problem John (Thu Jun 03 2004 - 11:09:05 CDT)
- AMBER: Loading mol2 Files in XLEaP Robyn Ayscue (Thu Jun 03 2004 - 11:14:00 CDT)
- Re: AMBER: Loading mol2 Files in XLEaP FyD (Thu Jun 03 2004 - 11:26:38 CDT)
- Re: AMBER: Loading mol2 Files in XLEaP Robyn Ayscue (Thu Jun 03 2004 - 13:39:37 CDT)
- Re: AMBER: Loading mol2 Files in XLEaP FyD (Thu Jun 03 2004 - 14:18:26 CDT)
- Re: AMBER: Loading mol2 Files in XLEaP Robyn Ayscue (Fri Jun 04 2004 - 13:24:05 CDT)
- Re: AMBER: Loading mol2 Files in XLEaP Guanglei Cui (Thu Jun 03 2004 - 14:20:26 CDT)
- AMBER: Amber7: Vidit Kumar (Thu Jun 03 2004 - 14:55:21 CDT)
- Re: AMBER: Amber7: FyD (Thu Jun 03 2004 - 15:11:28 CDT)
- AMBER: CARNAL- movement of an axis Wen Li (Thu Jun 03 2004 - 15:34:11 CDT)
- Re: AMBER: Loading mol2 Files in XLEaP Scott Brozell (Thu Jun 03 2004 - 16:49:13 CDT)
- Re: AMBER: Loading mol2 Files in XLEaP Robyn Ayscue (Thu Jun 03 2004 - 13:39:37 CDT)
- Re: AMBER: Loading mol2 Files in XLEaP Bill Ross (Thu Jun 03 2004 - 15:44:39 CDT)
- Re: AMBER: Loading mol2 Files in XLEaP David A. Case (Thu Jun 03 2004 - 17:02:07 CDT)
- Re: AMBER: Loading mol2 Files in XLEaP FyD (Thu Jun 03 2004 - 11:26:38 CDT)
- AMBER: Loading mol2 files in XLEaP Robyn Ayscue (Thu Jun 03 2004 - 11:17:54 CDT)
- AMBER: Sander & fix atoms bybaker_at_itsa.ucsf.edu (Thu Jun 03 2004 - 11:48:40 CDT)
- Re: AMBER: Sander & fix atoms Viktor Hornak (Thu Jun 03 2004 - 12:22:55 CDT)
- Re: AMBER: Sander & fix atoms bybaker_at_itsa.ucsf.edu (Thu Jun 03 2004 - 15:54:55 CDT)
- Re: AMBER: Sander & fix atoms bybaker_at_itsa.ucsf.edu (Thu Jun 03 2004 - 15:59:50 CDT)
- Re: AMBER: Sander & fix atoms Bill Ross (Thu Jun 03 2004 - 16:06:04 CDT)
- Re: AMBER: Sander & fix atoms bybaker_at_itsa.ucsf.edu (Thu Jun 03 2004 - 17:32:53 CDT)
- Re: AMBER: Sander & fix atoms bybaker_at_itsa.ucsf.edu (Thu Jun 03 2004 - 17:36:24 CDT)
- AMBER: mm_pbsa.pl question Fang, Jianwen (Thu Jun 03 2004 - 12:14:29 CDT)
- AMBER: sander7 on quad opteron Tru Huynh (Thu Jun 03 2004 - 13:13:39 CDT)
- Re: AMBER: CARNAL- movement of an axis Bill Ross (Thu Jun 03 2004 - 15:53:47 CDT)
- AMBER: information PROTON_INFO Ye Mei (Thu Jun 03 2004 - 22:33:30 CDT)
- AMBER: why the enegy of native state of protein is high in GBSA calculation? J. Zhang, Dr (Fri Jun 04 2004 - 04:21:20 CDT)
- AMBER: gibbs in amber8 A. Hungie (Fri Jun 04 2004 - 12:13:12 CDT)
- AMBER: free energy A. Hungie (Fri Jun 04 2004 - 12:21:59 CDT)
- AMBER: water BOX Xioling Chuang (Mon Jun 07 2004 - 09:09:33 CDT)
- AMBER: question about building initial structure xhu1_at_memphis.edu (Mon Jun 07 2004 - 12:19:13 CDT)
- AMBER: paramitrization problem lei jia (Mon Jun 07 2004 - 17:12:37 CDT)
- AMBER: bug in leap? Carsten Detering (Mon Jun 07 2004 - 18:14:30 CDT)
- AMBER: unnatural base - RESP charges in ANTECHAMBER Dr. Rainer Glaser (Mon Jun 07 2004 - 19:12:56 CDT)
- AMBER: Bad contacts bybaker_at_itsa.ucsf.edu (Mon Jun 07 2004 - 19:44:37 CDT)
- Re: AMBER: Bad contacts Bill Ross (Mon Jun 07 2004 - 20:37:16 CDT)
- AMBER: Constant Pressure Problem of MD Nan Lin (Mon Jun 07 2004 - 21:04:23 CDT)
- AMBER: Partial Charge on ligand for MD & MM/PBSA Nan Lin (Mon Jun 07 2004 - 21:11:25 CDT)
- AMBER: Calcium and GB cailliez (Tue Jun 08 2004 - 06:38:58 CDT)
- Re: AMBER: Calcium and GB David A. Case (Wed Jun 09 2004 - 21:10:26 CDT)
- AMBER: LINMIN failure Mizuguchi Mineyuki (Wed Jun 09 2004 - 21:40:16 CDT)
- Re: AMBER: LINMIN failure Robyn Ayscue (Thu Jun 10 2004 - 06:52:07 CDT)
- Re: AMBER: LINMIN failure Mizuguchi Mineyuki (Thu Jun 10 2004 - 21:58:24 CDT)
- RE: AMBER: LINMIN failure Ross Walker (Fri Jun 11 2004 - 01:10:23 CDT)
- RE: AMBER: LINMIN failure Ross Walker (Thu Jun 10 2004 - 12:10:08 CDT)
- AMBER: cluster MD conformations from sander Wen Li (Thu Jun 10 2004 - 14:13:14 CDT)
- Re: AMBER: cluster MD conformations from sander aldo jongejan (Fri Jun 11 2004 - 03:22:40 CDT)
- Re: AMBER: LINMIN failure Linda Prengaman (Thu Jun 10 2004 - 16:41:46 CDT)
- AMBER: LINMIN failure Mizuguchi Mineyuki (Wed Jun 09 2004 - 21:40:16 CDT)
- Re: AMBER: Calcium and GB David A. Case (Wed Jun 09 2004 - 21:10:26 CDT)
- AMBER: Compile xleap (amber8) in linux Red Hat 8.0 Xiaobing Tian (Tue Jun 08 2004 - 11:00:06 CDT)
- Re: AMBER: Compile xleap (amber8) in linux Red Hat 8.0 Viktor Hornak (Tue Jun 08 2004 - 12:35:51 CDT)
- Re: AMBER: Compile xleap (amber8) in linux Red Hat 8.0 Scott Brozell (Tue Jun 08 2004 - 13:11:15 CDT)
- Re: AMBER: Compile xleap (amber8) in linux Red Hat 8.0 Viktor Hornak (Tue Jun 08 2004 - 13:29:29 CDT)
- Re: AMBER: Compile xleap (amber8) in linux Red Hat 8.0 Xiaobing Tian (Tue Jun 08 2004 - 14:21:39 CDT)
- Re: AMBER: Compile xleap (amber8) in linux Red Hat 8.0 Viktor Hornak (Tue Jun 08 2004 - 14:30:38 CDT)
- Re: AMBER: Thank you Xiaobing Tian (Thu Jun 10 2004 - 14:37:37 CDT)
- Re: AMBER: Compile xleap (amber8) in linux Red Hat 8.0 Guanglei Cui (Tue Jun 08 2004 - 14:45:56 CDT)
- Re: AMBER: Compile xleap (amber8) in linux Red Hat 8.0 Xiaobing Tian (Tue Jun 08 2004 - 13:33:43 CDT)
- Re: AMBER: Compile xleap (amber8) in linux Red Hat 8.0 Scott Brozell (Tue Jun 08 2004 - 13:11:15 CDT)
- Re: AMBER: Compile xleap (amber8) in linux Red Hat 8.0 Scott Brozell (Tue Jun 08 2004 - 12:53:34 CDT)
- Re: AMBER: Compile xleap (amber8) in linux Red Hat 8.0 Viktor Hornak (Tue Jun 08 2004 - 12:35:51 CDT)
- AMBER: antechamber Matheus Froeyen (Wed Jun 09 2004 - 02:39:26 CDT)
- AMBER: cluster analysis Stefano.Pieraccini_at_unimi.it (Wed Jun 09 2004 - 06:19:40 CDT)
- AMBER: How to neutralize system? scopio (Wed Jun 09 2004 - 09:47:44 CDT)
- AMBER: Amber Transition State Output Johnson Agbo (Wed Jun 09 2004 - 14:46:03 CDT)
- Re: AMBER: Trajectory file Bill Ross (Wed Jun 09 2004 - 16:19:36 CDT)
- AMBER: xleap solvatebox problem Shan, Jufang (Wed Jun 09 2004 - 17:17:59 CDT)
- RE: AMBER: xleap solvatebox problem Ross Walker (Wed Jun 09 2004 - 17:48:12 CDT)
- Re: AMBER: xleap solvatebox problem David A. Case (Wed Jun 09 2004 - 17:51:06 CDT)
- Re: AMBER: xleap solvatebox/oct problem Jiten (Thu Jul 15 2004 - 10:18:59 CDT)
- Re: AMBER: xleap solvatebox/oct problem David A. Case (Thu Jul 15 2004 - 12:02:11 CDT)
- Re: AMBER: xleap solvatebox/oct problem Jiten (Fri Jul 16 2004 - 04:07:09 CDT)
- AMBER: Leap & x86_64 / PGI (was: xleap solvatebox/oct problem) Hannes Barsch (Mon Nov 29 2004 - 11:02:15 CST)
- Re: AMBER: Leap & x86_64 / PGI (was: xleap solvatebox/oct problem) David A. Case (Wed Dec 01 2004 - 11:44:12 CST)
- (long) Re: AMBER: Leap & x86_64 / PGI (was: xleap solvatebox/oct problem) Tru Huynh (Thu Dec 02 2004 - 14:00:17 CST)
- Re: AMBER: xleap solvatebox/oct problem Jiten (Thu Jul 15 2004 - 10:18:59 CDT)
- Re: AMBER: xleap solvatebox problem James W. Caldwell (Wed Jun 09 2004 - 17:49:07 CDT)
- AMBER: antechamber/parmchk ATTN: needs revision Nan Lin (Wed Jun 09 2004 - 13:48:55 CDT)
- AMBER: Amber & mutation bybaker_at_itsa.ucsf.edu (Wed Jun 09 2004 - 19:53:58 CDT)
- AMBER: nmode with mm/pbsa Nan Lin (Wed Jun 09 2004 - 20:18:15 CDT)
- AMBER: Xleap YangPeng (Thu Jun 10 2004 - 03:49:02 CDT)
- AMBER: Compiling Amber8 on Mac OS X Robyn Ayscue (Thu Jun 10 2004 - 07:25:40 CDT)
- AMBER: parmcal problem scopio (Thu Jun 10 2004 - 09:46:11 CDT)
- AMBER: xleap solvatebox problem Shan, Jufang (Thu Jun 10 2004 - 09:49:25 CDT)
- AMBER: PARSE radius for P david.evans_at_ulsop.ac.uk (Thu Jun 10 2004 - 12:59:30 CDT)
- AMBER: Core Dump ERROR When Using TIP4P Dat H. Nguyen (Thu Jun 10 2004 - 20:12:06 CDT)
- AMBER: Checking Results? Linda Prengaman (Thu Jun 10 2004 - 20:49:33 CDT)
- AMBER: ifort -parallel Joachim Reichelt (Fri Jun 11 2004 - 04:15:58 CDT)
- AMBER: savepdb vs ambpdb Golebiowski Jerome (Fri Jun 11 2004 - 10:17:40 CDT)
- AMBER: PBCAL in mm-pbsa calculation nlxc (Fri Jun 11 2004 - 12:26:21 CDT)
- AMBER: Suface area parameter for fluorine in MM/PBSA nlxc (Fri Jun 11 2004 - 18:38:30 CDT)
- AMBER: POPE membrane, How to obtain prep and parm files? Marek Dynowski (Sat Jun 12 2004 - 12:07:08 CDT)
- AMBER: question about force field scopio (Mon Jun 14 2004 - 10:05:57 CDT)
- AMBER: Improper Torsional Parameters Johnson Agbo (Mon Jun 14 2004 - 15:41:12 CDT)
- Re: AMBER: Improper Torsional Parameters David A. Case (Mon Jun 14 2004 - 16:20:21 CDT)
- Re: AMBER: Improper Torsional Parameters Carlos Simmerling (Mon Jun 14 2004 - 16:54:57 CDT)
- AMBER: MOIL-View question Joseph Nachman (Tue Jun 15 2004 - 13:11:30 CDT)
- Re: AMBER: MOIL-View question Carlos Simmerling (Wed Jun 16 2004 - 06:57:27 CDT)
- Re: AMBER: MOIL-View question Joseph Nachman (Wed Jun 16 2004 - 14:35:17 CDT)
- Re: AMBER: MOIL-View question Carlos Simmerling (Wed Jun 16 2004 - 15:25:45 CDT)
- Re: AMBER: MOIL-View question Joseph Nachman (Wed Jun 16 2004 - 15:22:07 CDT)
- Re: AMBER: MOIL-View question David E. Konerding DSD Staff (Wed Jun 16 2004 - 17:30:47 CDT)
- AMBER: newer OPLS/AA? Sichun Yang (Mon Jun 21 2004 - 18:23:03 CDT)
- AMBER: RMSD calculations in ptraj and Carnal Joseph Nachman (Tue Jun 15 2004 - 13:24:38 CDT)
- AMBER: MOIL-View question Joseph Nachman (Tue Jun 15 2004 - 13:11:30 CDT)
- AMBER: Config file for installing Amber 8 on PC with Windows XP fangyu liang (Mon Jun 14 2004 - 18:21:07 CDT)
- AMBER: About umbrella sampling in Amber 8 Yuhui Cheng (Mon Jun 14 2004 - 20:45:44 CDT)
- AMBER: DENSITY in constant pressure MD nlxc (Tue Jun 15 2004 - 13:17:41 CDT)
- Re: AMBER: RMSD calculations in ptraj and Carnal Bill Ross (Tue Jun 15 2004 - 14:23:40 CDT)
- AMBER: binary files richard dimelow (Wed Jun 16 2004 - 08:29:48 CDT)
- AMBER: Trouble running molecular dynamics with an increase in temp in Sander Robyn Ayscue (Wed Jun 16 2004 - 08:43:05 CDT)
- Re: AMBER: Trouble running molecular dynamics with an increase in temp in Sander David A. Case (Wed Jun 16 2004 - 09:40:32 CDT)
- Re: AMBER: Trouble running molecular dynamics with an increase in temp in Sander Carlos Simmerling (Wed Jun 16 2004 - 09:42:33 CDT)
- Re: AMBER: Trouble running molecular dynamics with an increase in temp in Sander Andreas Svrcek-Seiler (Wed Jun 16 2004 - 09:58:33 CDT)
- AMBER: problems with extra points German Sciaini (Wed Jun 16 2004 - 11:29:45 CDT)
- AMBER: Nmode sebnem (Wed Jun 16 2004 - 18:47:18 CDT)
- AMBER: Z-DNA xiaowei li (Thu Jun 17 2004 - 13:43:13 CDT)
- Re: AMBER: Z-DNA Bill Ross (Thu Jun 17 2004 - 15:00:55 CDT)
- AMBER: Using gibbs to calculate free energy Xioling Chuang (Fri Jun 18 2004 - 08:15:31 CDT)
- AMBER: Deeper problem with the energetics of the system nlxc (Fri Jun 18 2004 - 12:56:52 CDT)
- AMBER: The first and second derivatives Johnson Agbo (Fri Jun 18 2004 - 13:08:49 CDT)
- AMBER: Could not assign parameters Sivanesan Dakshanamurthy (Fri Jun 18 2004 - 13:52:18 CDT)
- AMBER: Changing MAXPR in Amber 8? Robyn Ayscue (Fri Jun 18 2004 - 14:08:13 CDT)
- AMBER: leap.log warnings scopio (Sun Jun 20 2004 - 20:18:40 CDT)
- Re: AMBER: leap.log warnings Bill Ross (Sun Jun 20 2004 - 21:52:17 CDT)
- AMBER: solvate proteins in xleap/amber8 Ting Wang (Mon Jun 21 2004 - 08:20:03 CDT)
- AMBER: TOP file in AMBER7/8 Ting Wang (Mon Jun 21 2004 - 08:32:25 CDT)
- AMBER: nmanal problem Ben Cossins (Mon Jun 21 2004 - 10:45:20 CDT)
- AMBER: Opteron-64bit work station sachin patil (Mon Jun 21 2004 - 11:18:16 CDT)
- AMBER: High B-factor!! Pradipta Bandyopadhyay (Tue Jun 22 2004 - 07:13:09 CDT)
- AMBER: MD & running time bybaker_at_itsa.ucsf.edu (Tue Jun 22 2004 - 13:11:58 CDT)
- AMBER: Problems in Amber MPI version (64 bits machine) Haijun Yang (Tue Jun 22 2004 - 16:57:07 CDT)
- AMBER: problems to run ptraj German Sciaini (Tue Jun 22 2004 - 17:29:36 CDT)
- Thanks - Re: AMBER: MD & running time bybaker_at_itsa.ucsf.edu (Tue Jun 22 2004 - 18:29:09 CDT)
- Re: AMBER: MD & running time Bill Ross (Tue Jun 22 2004 - 20:48:03 CDT)
- AMBER: GB parameters for Calcium cailliez (Wed Jun 23 2004 - 07:39:38 CDT)
- AMBER: Box range in vacuum when restart MD scopio (Wed Jun 23 2004 - 08:22:31 CDT)
- AMBER: a question on MM-PBSA and Delphi Jiayun (Wed Jun 23 2004 - 08:34:31 CDT)
- AMBER: amber8 parallel jobs spookie (Wed Jun 23 2004 - 23:50:48 CDT)
- AMBER: AMBER7 : update force field gaff.dat and parm99.dat Guillaume Bollot (Thu Jun 24 2004 - 07:48:39 CDT)
- AMBER: AMBER7 update force field Guillaume Bollot (Thu Jun 24 2004 - 08:23:44 CDT)
- AMBER: Restrain or freeze molecule question? Guillaume Bollot (Thu Jun 24 2004 - 05:48:33 CDT)
- AMBER: A problem about a sander parallel run Yongzhi Chen (Thu Jun 24 2004 - 13:40:37 CDT)
- AMBER: Units of Charges on Atoms Johnson Agbo (Thu Jun 24 2004 - 14:22:49 CDT)
- AMBER: Amber 8 installation fangyu liang (Thu Jun 24 2004 - 17:24:43 CDT)
- RE: AMBER: Amber 8 installation Ross Walker (Thu Jun 24 2004 - 17:38:57 CDT)
- Re: AMBER: Amber 8 installation spookie (Thu Jun 24 2004 - 17:42:40 CDT)
- RE: AMBER: Amber 8 installation fangyu liang (Fri Jun 25 2004 - 13:03:06 CDT)
- AMBER: Born radii Marcin Krol (Fri Jun 25 2004 - 06:24:48 CDT)
- AMBER: sander in parallel, amber8 spookie (Fri Jun 25 2004 - 03:49:30 CDT)
- AMBER: Problems with X.R.E.D. Scott (Fri Jun 25 2004 - 10:49:24 CDT)
- AMBER: restraints error Venkata S Koppuravuri (Fri Jun 25 2004 - 12:10:35 CDT)
- AMBER: PBCAL in MM/PBSA nlxc (Fri Jun 25 2004 - 14:09:19 CDT)
- AMBER: octavalent metal Brent Krueger (Fri Jun 25 2004 - 16:17:01 CDT)
- AMBER: Problem with menu bar in LEAP Cenk Andac (Fri Jun 25 2004 - 16:54:47 CDT)
- Re: AMBER: Problem with menu bar in LEAP Dat H. Nguyen (Fri Jun 25 2004 - 17:09:00 CDT)
- RE: AMBER: Problem with menu bar in LEAP Ross Walker (Fri Jun 25 2004 - 17:12:13 CDT)
- AMBER: AMBPDB command requires libcxa.so.5 Cenk Andac (Sat Jun 26 2004 - 10:16:52 CDT)
- Re: AMBER: AMBPDB command requires libcxa.so.5 David A. Case (Sat Jun 26 2004 - 13:56:09 CDT)
- Re: AMBER: AMBPDB command requires libcxa.so.5 Amber admin (Mon Jun 28 2004 - 10:12:45 CDT)
- AMBER: Problems with processing SYBYL-Tripos pdb files in LEAP Cenk Andac (Wed Jun 30 2004 - 10:14:18 CDT)
- AMBER: Problems with processing SYBYL-Tripos pdb files in LEAP Cenk Andac (Wed Jun 30 2004 - 10:12:10 CDT)
- Re: AMBER: Problem with menu bar in LEAP sachin patil (Sun Jun 27 2004 - 12:01:30 CDT)
- AMBER: -p4pg problem spookie (Sat Jun 26 2004 - 03:34:40 CDT)
- AMBER: "Total vdw box size" information is gone Helios Chen (Sun Jun 27 2004 - 02:57:50 CDT)
- AMBER: (no subject) Andrew Box (Sun Jun 27 2004 - 22:29:34 CDT)
- AMBER: problem not with sander, but with mpich spookie (Mon Jun 28 2004 - 04:08:37 CDT)
- AMBER: Amber8 compilation in IBM-AIX Jiten (Mon Jun 28 2004 - 04:19:42 CDT)
- Re: AMBER: Amber8 compilation in IBM-AIX Nicolas Grima (Mon Jun 28 2004 - 05:55:59 CDT)
- AMBER: NEC and Regatta Filip Lankas (Mon Jun 28 2004 - 06:47:26 CDT)
- Re: AMBER: Amber8 compilation in IBM-AIX Jiten (Mon Jun 28 2004 - 09:39:02 CDT)
- Re: AMBER: Amber8 compilation in IBM-AIX David A. Case (Mon Jun 28 2004 - 10:42:20 CDT)
- Re: AMBER: Amber8 compilation in IBM-AIX Jiten (Mon Jun 28 2004 - 19:48:25 CDT)
- Re: AMBER: Amber8 compilation in IBM-AIX Nicolas Grima (Mon Jun 28 2004 - 05:55:59 CDT)
- AMBER: jump in temperature + problem in trajectory files cailliez (Mon Jun 28 2004 - 09:11:14 CDT)
- AMBER: question about building prmtop and inpcrd files in xleap jz7_at_duke.edu (Mon Jun 28 2004 - 09:49:39 CDT)
- AMBER: Octahedron Box Seonah Kim (Mon Jun 28 2004 - 10:30:34 CDT)
- AMBER: About TI with sander Chunhu Tan (Mon Jun 28 2004 - 14:35:54 CDT)
- AMBER: Amber 8 installation error fangyu liang (Tue Jun 29 2004 - 02:00:32 CDT)
- Re: AMBER: Amber 8 installation error David A. Case (Tue Jun 29 2004 - 09:56:53 CDT)
- Re: AMBER: Amber 8 installation error fangyu liang (Tue Jun 29 2004 - 17:31:28 CDT)
- Re: AMBER: Amber 8 installation error fangyu liang (Tue Jun 29 2004 - 17:52:29 CDT)
- Re: AMBER: Amber 8 installation error fangyu liang (Thu Jul 01 2004 - 02:53:21 CDT)
- AMBER: Test run error in amber8 : IBM-AIX Jiten (Tue Jun 29 2004 - 07:16:48 CDT)
- AMBER: image and restart problems Steve Seibold (Tue Jun 29 2004 - 07:56:52 CDT)
- AMBER: PBCAL in mmpbsa nlxc (Tue Jun 29 2004 - 13:17:25 CDT)
- AMBER: Atom Labels Karl N. Kirschner (Tue Jun 29 2004 - 15:36:22 CDT)
- AMBER: Amber8 compilation problems on AIX Gabbar Daaku (Tue Jun 29 2004 - 21:50:13 CDT)
- AMBER: problems in using glycam Wen-Chi Tseng (Wed Jun 30 2004 - 06:12:22 CDT)
- AMBER: GB+LES Marcin Krol (Wed Jun 30 2004 - 04:43:27 CDT)
- AMBER: About Hbond calculations using ptraj javier perez (Mon Jun 28 2004 - 12:43:37 CDT)
- AMBER: traj. analysis Grace Li (Wed Jun 30 2004 - 14:05:07 CDT)
- AMBER: N-terminal Arg charges in ff99 not 1.00 Michael Dolan (Wed Jun 30 2004 - 16:08:15 CDT)
- Re: AMBER: N-terminal Arg charges in ff99 not 1.00 Guanglei Cui (Wed Jun 30 2004 - 16:13:55 CDT)
- RE: AMBER: N-terminal Arg charges in ff99 not 1.00 Ross Walker (Wed Jun 30 2004 - 16:26:22 CDT)
- AMBER: Implicit MD simulation yen li (Thu Jul 01 2004 - 06:49:24 CDT)
- AMBER: average structure using ptraj NI AI (Thu Jul 01 2004 - 11:18:34 CDT)
- Re: AMBER: average structure using ptraj Thomas E. Cheatham, III (Thu Jul 01 2004 - 12:40:25 CDT)
- Re: AMBER: average structure using ptraj Chris Moth (Fri Jul 02 2004 - 12:11:42 CDT)
- AMBER: no 'water.lib' in /amber8/dat/leap/ fangyu liang (Thu Jul 01 2004 - 15:21:50 CDT)
- AMBER: MAXRMSPT error in MOIL-view Robyn Ayscue (Thu Jul 01 2004 - 17:19:23 CDT)
- AMBER: tleap input file error fangyu liang (Thu Jul 01 2004 - 18:26:18 CDT)
- AMBER: peptide-DNA crosslink modeling M. L. Dodson (Thu Jul 01 2004 - 16:51:24 CDT)
- AMBER: mm_pbsa problem steven.j.enoch_at_gsk.com (Fri Jul 02 2004 - 05:29:57 CDT)
- AMBER: question about antechamber program Sivanesan Dakshanamurthy (Fri Jul 02 2004 - 13:42:07 CDT)
- AMBER: Protein MD yen li (Sat Jul 03 2004 - 11:04:59 CDT)
- AMBER: best PC laptop system to run Amber 8 fangyu liang (Sat Jul 03 2004 - 16:05:35 CDT)
- AMBER: Problem to converge minimization Guillaume Bollot (Mon Jul 05 2004 - 03:41:06 CDT)
- AMBER: Namelist problem Vlad Cojocaru (Mon Jul 05 2004 - 04:25:07 CDT)
- AMBER: details for Namelist problem Vlad Cojocaru (Mon Jul 05 2004 - 04:48:40 CDT)
- AMBER: combination rules German Sciaini (Mon Jul 05 2004 - 07:31:43 CDT)
- AMBER: details for Namelist problem Vlad Cojocaru (Mon Jul 05 2004 - 08:22:33 CDT)
- AMBER: leap problem in AMBER7 (residue insertion) Kuhn, Bernd {PRBD~Basel} (Mon Jul 05 2004 - 06:26:34 CDT)
- AMBER: Amber8 on Digital UNIX Guillermo Mulliert Carlín (Mon Jul 05 2004 - 10:30:15 CDT)
- AMBER: multiple heat bath GB+LES Marcin Krol (Mon Jul 05 2004 - 11:53:31 CDT)
- AMBER: How to make leap recognise Zn2+? Yongzhi Chen (Mon Jul 05 2004 - 20:41:26 CDT)
- AMBER: sander on multiprocessors cailliez (Tue Jul 06 2004 - 02:38:39 CDT)
- AMBER: idecomp Marcela Madrid (Tue Jul 06 2004 - 10:42:20 CDT)
- AMBER: running MD simulatons sachin patil (Tue Jul 06 2004 - 11:52:58 CDT)
- AMBER: Amber7 bugfix1 sachin patil (Tue Jul 06 2004 - 12:47:38 CDT)
- AMBER: charge problem in minimization yen li (Wed Jul 07 2004 - 01:33:09 CDT)
- AMBER: parameter development for nucleotide analogues Vlad Cojocaru (Wed Jul 07 2004 - 05:37:50 CDT)
- AMBER: name error Prashansa Agrawal (Wed Jul 07 2004 - 17:57:53 CDT)
- AMBER: Namelist problem solved Vlad Cojocaru (Wed Jul 07 2004 - 06:09:16 CDT)
- AMBER: Molecular dynamic bybaker_at_itsa.ucsf.edu (Wed Jul 07 2004 - 16:12:33 CDT)
- AMBER: My strange result of TI. Chunhu Tan (Wed Jul 07 2004 - 18:35:19 CDT)
- AMBER: correlation in Amber 8 Bimo Ario Tejo (Thu Jul 08 2004 - 03:14:34 CDT)
- AMBER: segmentation fault in leap anshul_at_imtech.res.in (Thu Jul 08 2004 - 16:40:42 CDT)
- AMBER: question about Ptraj jz7_at_duke.edu (Thu Jul 08 2004 - 11:32:07 CDT)
- AMBER: weird box expansion Herbert Georg (Thu Jul 08 2004 - 11:57:57 CDT)
- AMBER: problems with mdcrd Carsten Detering (Thu Jul 08 2004 - 12:16:04 CDT)
- AMBER: parameter development for nucleotide analogues Vlad Cojocaru (Thu Jul 08 2004 - 12:49:42 CDT)
- AMBER: namelist problem solved Vlad Cojocaru (Thu Jul 08 2004 - 12:50:10 CDT)
- AMBER: Problem with sander - Error on Open Mike (Thu Jul 08 2004 - 16:38:37 CDT)
- AMBER: how to calculate E-pot from restart file? J. Zhang, Dr (Thu Jul 08 2004 - 22:13:44 CDT)
- AMBER: execution time cailliez (Fri Jul 09 2004 - 04:50:25 CDT)
- AMBER: cys protecting group parameters Stefano.Pieraccini_at_unimi.it (Fri Jul 09 2004 - 08:48:36 CDT)
- AMBER: cys protecting groups parameters Stefano.Pieraccini_at_unimi.it (Fri Jul 09 2004 - 07:41:20 CDT)
- AMBER: Setup for parallel computing fangyu liang (Fri Jul 09 2004 - 12:00:32 CDT)
- AMBER: Disulfide bond command bybaker_at_itsa.ucsf.edu (Fri Jul 09 2004 - 13:16:13 CDT)
- AMBER: MD simulation : problem sachin patil (Sat Jul 10 2004 - 00:08:15 CDT)
- AMBER: About the calculation of non-bond list Wu Lei (Sat Jul 10 2004 - 09:21:57 CDT)
- AMBER: Problem amber8 compilation in Opteron(Linux) with PGI-workstation compiler Jiten (Sat Jul 10 2004 - 10:30:15 CDT)
- Re: AMBER: Problem amber8 compilation in Opteron(Linux) with PGI-workstation compiler Mark Williamson (Sat Jul 10 2004 - 12:54:56 CDT)
- Re: AMBER: Problem amber8 compilation in Opteron(Linux) with PGI-workstation compiler Jiten (Sun Jul 11 2004 - 00:04:35 CDT)
- RE: AMBER: Problem amber8 compilation in Opteron(Linux) with PGI-workstation compiler Ross Walker (Sun Jul 11 2004 - 13:38:49 CDT)
- RE: AMBER: Problem amber8 compilation in Opteron(Linux) with PGI-workstation compiler Mark Williamson (Sun Jul 11 2004 - 15:52:45 CDT)
- RE: AMBER: Problem amber8 compilation in Opteron(Linux) with PGI-workstation compiler Scott Brozell (Mon Jul 12 2004 - 13:30:39 CDT)
- Re: AMBER: Problem amber8 compilation in Opteron(Linux) with PGI-workstation compiler Jiten (Tue Jul 13 2004 - 04:52:06 CDT)
- Re: AMBER: Problem amber8 compilation in Opteron(Linux) with PGI-workstation compiler Jiten (Tue Jul 13 2004 - 04:46:57 CDT)
- Re: AMBER: Problem amber8 compilation in Opteron(Linux) with PGI-workstation compiler Jiten (Mon Jul 12 2004 - 04:36:36 CDT)
- Re: AMBER: Problem amber8 compilation in Opteron(Linux) with PGI-workstation compiler Jiten (Sun Jul 11 2004 - 00:24:27 CDT)
- Re: AMBER: Problem amber8 compilation in Opteron(Linux) with PGI-workstation compiler Jiten (Sun Jul 11 2004 - 00:04:35 CDT)
- Re: AMBER: Problem amber8 compilation in Opteron(Linux) with PGI-workstation compiler David A. Case (Sat Jul 10 2004 - 22:46:57 CDT)
- Re: AMBER: Problem amber8 compilation in Opteron(Linux) with PGI-workstation compiler Mark Williamson (Sat Jul 10 2004 - 12:54:56 CDT)
- AMBER: Rigid counteranion during MD !! Jiten (Sun Jul 11 2004 - 03:26:35 CDT)
- AMBER: solvation free energy hj zou (Fri Jul 09 2004 - 02:38:39 CDT)
- AMBER: hj zou (Sun Jul 11 2004 - 01:16:17 CDT)
- AMBER: solvation free energy hj zou (Sun Jul 11 2004 - 01:16:19 CDT)
- AMBER: Fe parameter hj zou (Mon Jul 12 2004 - 02:09:29 CDT)
- AMBER: Problems with CPU scaling on cluster Your Name (Mon Jul 12 2004 - 03:12:48 CDT)
- AMBER: RNA sequence with DNA backbone? Arvind (Mon Jul 12 2004 - 06:26:36 CDT)
- AMBER: what is averaged RMS fluctuation? jz7_at_duke.edu (Mon Jul 12 2004 - 11:17:30 CDT)
- RE: AMBER: what is averaged RMS fluctuation? Ross Walker (Mon Jul 12 2004 - 13:51:47 CDT)
- RE: AMBER: what is averaged RMS fluctuation? jz7_at_duke.edu (Mon Jul 12 2004 - 14:59:26 CDT)
- RE: AMBER: what is averaged RMS fluctuation? Thomas E. Cheatham, III (Mon Jul 12 2004 - 15:28:21 CDT)
- Re: AMBER: what is averaged RMS fluctuation? Carlos Simmerling (Mon Jul 12 2004 - 15:37:13 CDT)
- RE: AMBER: what is averaged RMS fluctuation? Ross Walker (Mon Jul 12 2004 - 15:40:23 CDT)
- AMBER: question about ptraj jz7_at_duke.edu (Wed Jul 21 2004 - 15:00:01 CDT)
- Re: AMBER: question about ptraj Guanglei Cui (Wed Jul 21 2004 - 15:32:29 CDT)
- AMBER: cut offs in amber? Grace Li (Wed Jul 21 2004 - 15:47:43 CDT)
- RE: AMBER: cut offs in amber? Ross Walker (Wed Jul 21 2004 - 16:05:02 CDT)
- RE: AMBER: cut offs in amber? Grace Li (Wed Jul 21 2004 - 16:20:40 CDT)
- Re: AMBER: cut offs in amber? Carlos Simmerling (Wed Jul 21 2004 - 16:32:18 CDT)
- RE: AMBER: cut offs in amber? Ross Walker (Wed Jul 21 2004 - 16:39:47 CDT)
- RE: AMBER: cut offs in amber? Grace Li (Wed Jul 21 2004 - 17:03:05 CDT)
- RE: AMBER: cut offs in amber? Ross Walker (Wed Jul 21 2004 - 17:10:09 CDT)
- RE: AMBER: what is averaged RMS fluctuation? jz7_at_duke.edu (Mon Jul 12 2004 - 14:59:26 CDT)
- RE: AMBER: what is averaged RMS fluctuation? Ross Walker (Mon Jul 12 2004 - 13:51:47 CDT)
- AMBER: About the free energy difference in vacuum with GIBBS. Chunhu Tan (Mon Jul 12 2004 - 17:34:35 CDT)
- AMBER: Jiten (Tue Jul 13 2004 - 04:25:53 CDT)
- AMBER: Angle restraint during MD Jiten (Tue Jul 13 2004 - 04:28:14 CDT)
- Re: AMBER: Angle restraint during MD Carlos Simmerling (Tue Jul 13 2004 - 07:00:42 CDT)
- Re: AMBER: Angle restraint during MD Jiten (Tue Jul 13 2004 - 11:21:28 CDT)
- Re: AMBER: Angle restraint during MD Carlos Simmerling (Tue Jul 13 2004 - 12:47:16 CDT)
- Re: AMBER: Angle restraint during MD Jiten (Wed Jul 14 2004 - 00:51:42 CDT)
- Re: AMBER: Angle restraint during MD Carlos Simmerling (Wed Jul 14 2004 - 08:39:38 CDT)
- Re: AMBER: Angle restraint during MD and namelist problem in amber8 Jiten (Wed Jul 14 2004 - 11:13:38 CDT)
- Re: AMBER: Angle restraint during MD and namelist problem in amber8 Thomas E. Cheatham, III (Wed Jul 14 2004 - 11:22:26 CDT)
- Re: AMBER: Angle restraint during MD Jiten (Tue Jul 13 2004 - 11:21:28 CDT)
- Re: AMBER: Angle restraint during MD Carlos Simmerling (Tue Jul 13 2004 - 07:00:42 CDT)
- AMBER: Use of ibelly with nmode analysis steven.j.enoch_at_gsk.com (Tue Jul 13 2004 - 08:30:30 CDT)
- AMBER: torsion scan Guanglei Cui (Tue Jul 13 2004 - 10:18:32 CDT)
- AMBER: (no subject) anshul_at_imtech.res.in (Tue Jul 13 2004 - 22:40:08 CDT)
- AMBER: Parameter generation from RESP charges anshul_at_imtech.res.in (Tue Jul 13 2004 - 23:02:07 CDT)
- Re: AMBER: Molecular dynamic & Acknowledgement bybaker_at_itsa.ucsf.edu (Tue Jul 13 2004 - 13:20:50 CDT)
- AMBER: anisotropic scaling Xiang, Tian-Xiang (Tue Jul 13 2004 - 14:12:32 CDT)
- AMBER: Implicit MD problem yen li (Wed Jul 14 2004 - 06:01:39 CDT)
- AMBER: Problem with divcon - increasing MXATTS? steven.j.enoch_at_gsk.com (Wed Jul 14 2004 - 10:33:38 CDT)
- AMBER: Enthalpy of solvent-solute vanderWaals Scott (Wed Jul 14 2004 - 14:56:45 CDT)
- AMBER: tleap - FATAL error Sivanesan Dakshanamurthy (Wed Jul 14 2004 - 16:28:41 CDT)
- AMBER: Normal mode calculation with periodic boundary condition Johnson Agbo (Thu Jul 15 2004 - 00:15:09 CDT)
- AMBER: announcing normal mode analysis web server ElNemo Karsten Suhre (Thu Jul 15 2004 - 03:21:07 CDT)
- AMBER: Correl in Amber8: Diagonal elements not 1? Bimo Ario Tejo (Thu Jul 15 2004 - 06:47:43 CDT)
- AMBER: Problems with amber8 and pgf90 Marc Perea (Thu Jul 15 2004 - 05:30:36 CDT)
- AMBER: pH effect on protein folding Rukman Hertadi (Thu Jul 15 2004 - 21:00:54 CDT)
- AMBER: Amber8: Vlimit problem again Yuhui Cheng (Thu Jul 15 2004 - 21:34:58 CDT)
- AMBER: NB pairs exceeds? Chen (Fri Jul 16 2004 - 02:35:16 CDT)
- Re: AMBER: NB pairs exceeds? Wu Lei (Fri Jul 16 2004 - 03:07:56 CDT)
- AMBER: X-CA-CT-X dih. FF param ? FyD (Fri Jul 16 2004 - 12:08:26 CDT)
- AMBER: question about production runs opitz_at_che.udel.edu (Fri Jul 16 2004 - 14:42:06 CDT)
- AMBER: RESP vs. AM1-BCC charges for isoprene Oliver Hucke (Fri Jul 16 2004 - 16:00:57 CDT)
- Re: AMBER: RESP vs. AM1-BCC charges for isoprene Rhonda Torres (Fri Jul 16 2004 - 16:20:42 CDT)
- Re: AMBER: RESP vs. AM1-BCC charges for isoprene Carsten Detering (Fri Jul 16 2004 - 16:37:22 CDT)
- Re: AMBER: RESP vs. AM1-BCC charges for isoprene Carsten Detering (Fri Jul 16 2004 - 16:33:51 CDT)
- Re: AMBER: RESP vs. AM1-BCC charges for isoprene Ilyas Yildirim (Fri Jul 16 2004 - 17:36:22 CDT)
- Re: AMBER: RESP vs. AM1-BCC charges for isoprene Joe Harriman (Sat Jul 17 2004 - 07:44:47 CDT)
- RE: AMBER: RESP vs. AM1-BCC charges for isoprene ajakalian_at_lav.Boehringer-Ingelheim.com (Thu Jul 22 2004 - 07:43:16 CDT)
- RE: AMBER: RESP vs. AM1-BCC charges for isoprene ajakalian_at_lav.Boehringer-Ingelheim.com (Mon Jul 26 2004 - 10:09:31 CDT)
- AMBER: Cubic Ice Johnson Agbo (Fri Jul 16 2004 - 20:08:14 CDT)
- AMBER: Amber7 (8):FLUSH--FAILED:: Resource temporarily unavailable Jean-Christophe Ducom (Sat Jul 17 2004 - 15:01:47 CDT)
- AMBER: Re: Results from RED-II beta FyD (Sun Jul 18 2004 - 11:11:41 CDT)
- AMBER: vdw energy in minimization anshul_at_imtech.res.in (Mon Jul 19 2004 - 10:11:17 CDT)
- AMBER: Weird compiling problem in Amber 8 echanco_at_uci.edu (Mon Jul 19 2004 - 00:51:29 CDT)
- AMBER: .lib file error in tleap anita pachaimuthu (Mon Jul 19 2004 - 12:19:19 CDT)
- AMBER: A problem regarding constant pH calculation in Amber 8 Yongzhi Chen (Mon Jul 19 2004 - 20:54:43 CDT)
- AMBER: PB Bomb in pb_reslist(): maxnbr too small steven.j.enoch_at_gsk.com (Tue Jul 20 2004 - 08:00:59 CDT)
- AMBER: antechamber - improper torsions Oliver Hucke (Tue Jul 20 2004 - 11:23:02 CDT)
- AMBER: FW: missing bondi radii of Br and F for surface area calculation S. Frank Yan (Tue Jul 20 2004 - 12:30:13 CDT)
- AMBER: about GLYCAM prep files in AMBER Ozlem Demir (Tue Jul 20 2004 - 12:34:07 CDT)
- AMBER: Problem with sander tutorial. tarek mahfouz (Tue Jul 20 2004 - 14:09:44 CDT)
- AMBER: Bondi radii for BR and F in mm_pbsa calculation S. Frank Yan (Tue Jul 20 2004 - 18:01:03 CDT)
- AMBER: Leap could not find atom type CK ÎâŔÚ (Tue Jul 20 2004 - 23:35:54 CDT)
- AMBER: Re: Re: AMBER: Is it a bug?(in prep file opls_unict.in) ÎâŔÚ (Wed Jul 21 2004 - 05:59:13 CDT)
- AMBER: atom out of bounds Venkata S Koppuravuri (Wed Jul 21 2004 - 08:25:25 CDT)
- AMBER: Co-ordination error while running tleap anita pachaimuthu (Wed Jul 21 2004 - 10:12:12 CDT)
- AMBER: What happen when sander reads charge increments from cpin file? Yongzhi Chen (Wed Jul 21 2004 - 15:24:51 CDT)
- AMBER: amparm Vincent Bisetty (Wed Jul 21 2004 - 15:37:39 CDT)
- AMBER: sander tutorial mathew k varghese (Thu Jul 22 2004 - 07:16:33 CDT)
- AMBER: mutation of atoms Nelson Fonseca (Thu Jul 22 2004 - 07:41:22 CDT)
- AMBER: found unknown atflg PB Scott (Thu Jul 22 2004 - 08:38:33 CDT)
- AMBER: Xleap crash, problem with residue bonding opitz_at_che.udel.edu (Thu Jul 22 2004 - 09:24:35 CDT)
- RE: AMBER: Xleap crash, problem with residue bonding Ross Walker (Thu Jul 22 2004 - 16:31:22 CDT)
- RE: AMBER: Xleap crash, problem with residue bonding Bill Ross (Thu Jul 22 2004 - 16:55:58 CDT)
- Re: AMBER: Xleap crash, problem with residue bonding opitz_at_che.udel.edu (Mon Jul 26 2004 - 10:39:51 CDT)
- AMBER: user force Myunggi Yi (Thu Jul 22 2004 - 12:00:16 CDT)
- Re: AMBER: user force Furse, Kristina Elisabet (Thu Jul 22 2004 - 16:07:46 CDT)
- Re: AMBER: user force myunggi_at_csit.fsu.edu (Thu Jul 22 2004 - 16:48:28 CDT)
- RE: AMBER: user force Ross Walker (Thu Jul 22 2004 - 17:08:04 CDT)
- RE: AMBER: user force myunggi_at_csit.fsu.edu (Thu Jul 22 2004 - 17:25:50 CDT)
- Re: AMBER: user force Carlos Simmerling (Thu Jul 22 2004 - 17:28:42 CDT)
- RE: AMBER: user force Ross Walker (Thu Jul 22 2004 - 17:40:16 CDT)
- RE: AMBER: user force myunggi_at_csit.fsu.edu (Thu Jul 22 2004 - 18:26:14 CDT)
- Re: AMBER: user force Carlos Simmerling (Fri Jul 23 2004 - 06:47:17 CDT)
- Re: AMBER: user force myunggi_at_csit.fsu.edu (Thu Jul 22 2004 - 16:48:28 CDT)
- Re: AMBER: user force Bill Ross (Thu Jul 22 2004 - 16:57:24 CDT)
- Re: AMBER: user force Furse, Kristina Elisabet (Thu Jul 22 2004 - 16:07:46 CDT)
- AMBER: (no subject) myunggi_at_csit.fsu.edu (Thu Jul 22 2004 - 12:10:09 CDT)
- AMBER: atom out of bounds (fwd) Venkata S Koppuravuri (Thu Jul 22 2004 - 14:52:13 CDT)
- AMBER: Ewald parameter range Johnson Agbo (Thu Jul 22 2004 - 19:16:08 CDT)
- AMBER: sander : constraints to conserve hydrogen bonds sachin patil (Thu Jul 22 2004 - 23:15:04 CDT)
- AMBER: pmemd. Osman Gani (Fri Jul 23 2004 - 12:09:55 CDT)
- AMBER: parametrization problem Carsten Detering (Fri Jul 23 2004 - 13:16:13 CDT)
- AMBER: atoms not in residue templates anshul_at_imtech.res.in (Sat Jul 24 2004 - 10:19:42 CDT)
- AMBER: erroe in installing amber8 anshul_at_imtech.res.in (Sat Jul 24 2004 - 12:11:02 CDT)
- AMBER: about the parameter of the cystein pair in MD simulation Yuhui Cheng (Sun Jul 25 2004 - 21:01:13 CDT)
- AMBER: about running ptraj in amber8 jz7_at_duke.edu (Mon Jul 26 2004 - 09:04:33 CDT)
- AMBER: amber compilation Livadaru, Lucian (Mon Jul 26 2004 - 15:15:50 CDT)
- AMBER: Temperature Regulation Johnson Agbo (Mon Jul 26 2004 - 23:40:44 CDT)
- AMBER: mm_pbsa Abmer8 example John (Tue Jul 27 2004 - 05:38:50 CDT)
- AMBER: question on simulated annealing Venkata S Koppuravuri (Tue Jul 27 2004 - 13:21:52 CDT)
- AMBER: Question on Clustering Analysis Chen, Ya (Tue Jul 27 2004 - 13:26:30 CDT)
- AMBER: about correlation calculation in ptraj jz7_at_duke.edu (Tue Jul 27 2004 - 16:20:53 CDT)
- AMBER: animation? S. Frank Yan (Wed Jul 28 2004 - 01:29:51 CDT)
- AMBER: PB bomb in pb_saarc steven.j.enoch_at_gsk.com (Wed Jul 28 2004 - 03:26:38 CDT)
- AMBER: simulated annealing Abd Ghani Bin Abd Aziz (Wed Jul 28 2004 - 07:08:48 CDT)
- AMBER: simulated annealing.. Abd Ghani Bin Abd Aziz (Wed Jul 28 2004 - 08:45:55 CDT)
- AMBER: tleap: automatically identify and connect disulfide bonds? Raik Grünberg (Wed Jul 28 2004 - 12:27:31 CDT)
- Re: AMBER: tleap: automatically identify and connect disulfide bonds? Scott Brozell (Wed Jul 28 2004 - 15:22:52 CDT)
- AMBER: Re: AMBER: Temperature Regulation Dawsonzhu_at_aol.com (Wed Jul 28 2004 - 19:44:56 CDT)
- AMBER: NSPSOL in parm file Sichun Yang (Wed Jul 28 2004 - 23:14:01 CDT)
- AMBER: umbrella sampling tang kwa (Thu Jul 29 2004 - 12:25:00 CDT)
- AMBER: Re: constant pH calculation in Amber8 John Mongan (Thu Jul 29 2004 - 16:40:36 CDT)
- AMBER: csong_at_mail.sdu.edu.cn (Fri Jul 30 2004 - 04:08:40 CDT)
- AMBER: (no subject) HL Eastwood (Fri Jul 30 2004 - 10:47:18 CDT)
- AMBER: WHAM program tang kwa (Fri Jul 30 2004 - 11:09:02 CDT)
- AMBER: AMBER 6 compilation problems! Grace Li (Fri Jul 30 2004 - 12:17:39 CDT)
- AMBER: Imaging problem Steve Seibold (Fri Jul 30 2004 - 14:05:12 CDT)
- AMBER: lib file anita Pachaimuthu (Fri Jul 30 2004 - 15:09:19 CDT)
- AMBER: FW: Imaging problem Steve Seibold (Mon Aug 02 2004 - 15:32:37 CDT)
- AMBER: recompiling amber8 Carsten Detering (Mon Aug 02 2004 - 19:57:19 CDT)
- AMBER: charge not zero anshul_at_imtech.res.in (Tue Aug 03 2004 - 12:29:12 CDT)
- AMBER: mm_pbsa problem Carsten Detering (Tue Aug 03 2004 - 15:49:34 CDT)
- AMBER: Problem: Installing Amber8 on PC with Windows XP Nhat-hang Duong (Tue Aug 03 2004 - 15:38:55 CDT)
- AMBER: Re: Phosphoserine residue in AMBER David A. Case (Tue Aug 03 2004 - 16:23:20 CDT)
- AMBER: Bug and Patch in ANAL Andy Purkiss (Wed Aug 04 2004 - 10:38:30 CDT)
- AMBER: RMSD result from GB model Yongzhi Chen (Wed Aug 04 2004 - 12:35:03 CDT)
- AMBER: atoms not in residue templates Yongzhi Chen (Wed Aug 04 2004 - 12:53:08 CDT)
- AMBER: intense and spectrum Yaroslava Yingling (Wed Aug 04 2004 - 13:15:28 CDT)
- AMBER: RE: Hello Sir, Ross Walker (Wed Aug 04 2004 - 13:32:28 CDT)
- AMBER: sander.QMMM: CHARGE keyword in divcon.in file M. L. Dodson (Wed Aug 04 2004 - 14:23:29 CDT)
- AMBER: A question about pheTI in AMBER8 test. Chunhu Tan (Wed Aug 04 2004 - 16:35:48 CDT)
- AMBER: Angle parameters in phosphate groups Seongeun Yang (Thu Aug 05 2004 - 07:17:44 CDT)
- AMBER: How to covalently bind a ligand to a residue? Ozlem Demir (Thu Aug 05 2004 - 10:54:19 CDT)
- Re: AMBER: How to covalently bind a ligand to a residue? Bimo Ario Tejo (Fri Aug 06 2004 - 00:06:02 CDT)
- Re: AMBER: How to covalently bind a ligand to a residue? david.evans_at_ulsop.ac.uk (Fri Aug 06 2004 - 03:11:39 CDT)
- Re: AMBER: How to covalently bind a ligand to a residue? david.evans_at_ulsop.ac.uk (Fri Aug 06 2004 - 03:22:17 CDT)
- AMBER: Using TIP4P water in free energy calculation Lijiang Yang (Thu Aug 05 2004 - 17:03:36 CDT)
- AMBER: sander error Rukman Hertadi (Thu Aug 05 2004 - 23:33:41 CDT)
- AMBER: another cpinutil.pl error Rukman Hertadi (Fri Aug 06 2004 - 00:35:09 CDT)
- AMBER: RE: about PME in Amber6 Ross Walker (Fri Aug 06 2004 - 13:37:06 CDT)
- AMBER: atomic positional fluctuation RAJA SWAMINATHAN (Sat Aug 07 2004 - 02:18:32 CDT)
- AMBER: antechamber test mathew k varghese (Sun Aug 08 2004 - 07:31:22 CDT)
- AMBER: Problems with Carnal coordinate average HL Eastwood (Mon Aug 09 2004 - 06:35:37 CDT)
- AMBER: error while loading shared libraries: libcxa.so.5 Madalin Giambasu (Mon Aug 09 2004 - 08:54:00 CDT)
- AMBER: trival question about format of pev file and covariance matrix jz7_at_duke.edu (Mon Aug 09 2004 - 10:52:03 CDT)
- AMBER: Sander sachin patil (Mon Aug 09 2004 - 11:24:59 CDT)
- Re: AMBER: Problems with Carnal coordinate average Bill Ross (Mon Aug 09 2004 - 12:12:04 CDT)
- AMBER: Adding residues yen li (Mon Aug 09 2004 - 12:47:44 CDT)
- AMBER: question about covariance matrix from ptraj jz7_at_duke.edu (Mon Aug 09 2004 - 14:25:10 CDT)
- AMBER: resp charge calculation for Fe+3 heme Sebastian Fernandez Alberti (Mon Aug 09 2004 - 14:45:18 CDT)
- AMBER: rdparm problem Lijiang Yang (Mon Aug 09 2004 - 17:43:10 CDT)
- AMBER: perturb a water to a dummy water with shake Dr. Turgut Bastug (Mon Aug 09 2004 - 19:24:25 CDT)
- AMBER: how to correct the charge of oligosaccharides Wen-Chi Tseng (Mon Aug 09 2004 - 21:28:25 CDT)
- AMBER: pb_bomb in setgrd() steven.j.enoch_at_gsk.com (Tue Aug 10 2004 - 05:34:42 CDT)
- AMBER: Amber8 - LAM MPI Compilation problems Thomas Steinbrecher (Tue Aug 10 2004 - 11:16:38 CDT)
- AMBER: RESP partial charge calculation Sebastian Fernandez Alberti (Tue Aug 10 2004 - 11:21:06 CDT)
- AMBER: unknown residue: ABA Guowen Han (Tue Aug 10 2004 - 13:31:25 CDT)
- AMBER: Re: RED II and changepot FyD (Tue Aug 10 2004 - 13:35:05 CDT)
- Re: AMBER: unknown residue: ABA Bill Ross (Tue Aug 10 2004 - 14:20:36 CDT)
- AMBER: Membrane protein simulation Gabbar Daaku (Tue Aug 10 2004 - 15:37:22 CDT)
- AMBER: bugfix.all Lihua Wang (Tue Aug 10 2004 - 15:48:51 CDT)
- AMBER: Atomic charges in Lactose Johnson Agbo (Tue Aug 10 2004 - 19:23:53 CDT)
- AMBER: From Andrew Box: Invitation and new email address box_twin2_at_hotmail.com (Tue Aug 10 2004 - 19:39:25 CDT)
- AMBER: installing amber 8 on 64 bit amd opteron Dr Gavin Seddon (Wed Aug 11 2004 - 00:55:05 CDT)
- AMBER: units Gustavo Pierdominici Sottile (Wed Aug 11 2004 - 10:03:38 CDT)
- AMBER: RESP charge derivation Vlad Cojocaru (Wed Aug 11 2004 - 11:10:19 CDT)
- Re: AMBER: How to test the used parameters. Bill Ross (Wed Aug 11 2004 - 12:31:28 CDT)
- AMBER: parameter Gustavo Pierdominici Sottile (Wed Aug 11 2004 - 15:45:02 CDT)
- AMBER: Gaussian in RED Vlad Cojocaru (Thu Aug 12 2004 - 07:37:05 CDT)
- AMBER: Angle parameters in phosphate groups Seongeun Yang (Thu Aug 12 2004 - 08:29:02 CDT)
- AMBER: ptraj -- velocities set to zero? Gabbar Daaku (Thu Aug 12 2004 - 10:53:04 CDT)
- AMBER: minimization output file format Marsita M (Thu Aug 12 2004 - 12:51:35 CDT)
- AMBER: bending Gustavo Pierdominici Sottile (Thu Aug 12 2004 - 14:28:42 CDT)
- AMBER: bending Gustavo Pierdominici Sottile (Thu Aug 12 2004 - 15:47:16 CDT)
- AMBER: question about compilation of AMBER8 on MANDRAKE9.2 Madalin Giambasu (Fri Aug 13 2004 - 05:02:57 CDT)
- AMBER: RED fails to read g94 output Vlad Cojocaru (Fri Aug 13 2004 - 05:35:20 CDT)
- AMBER: Amber: xleap crash Helios (Fri Aug 13 2004 - 07:00:30 CDT)
- AMBER: RED BUG!!!!...perhaps I fixed it Vlad Cojocaru (Fri Aug 13 2004 - 07:34:50 CDT)
- AMBER: RED BUG!!! Vlad Cojocaru (Fri Aug 13 2004 - 07:56:25 CDT)
- AMBER: Temp control ding (Fri Aug 13 2004 - 13:46:20 CDT)
- AMBER: pmemd problems Florian Barth (Fri Aug 13 2004 - 13:52:22 CDT)
- AMBER: Moil-view, prmtop, inpcrd question opitz_at_che.udel.edu (Fri Aug 13 2004 - 15:08:33 CDT)
- Re: AMBER: Moil-view, prmtop, inpcrd question opitz_at_che.udel.edu (Fri Aug 13 2004 - 15:28:26 CDT)
- Re: AMBER: Moil-view, prmtop, inpcrd question Viktor Hornak (Fri Aug 13 2004 - 15:20:14 CDT)
- Re: AMBER: Moil-view, prmtop, inpcrd question opitz_at_che.udel.edu (Fri Aug 13 2004 - 16:08:27 CDT)
- Re: AMBER: Moil-view, prmtop, inpcrd question Carlos Simmerling (Sat Aug 14 2004 - 07:13:23 CDT)
- Re: AMBER: Moil-view, prmtop, inpcrd question opitz_at_che.udel.edu (Mon Aug 16 2004 - 13:17:35 CDT)
- Re: AMBER: Moil-view, prmtop, inpcrd question opitz_at_che.udel.edu (Mon Aug 16 2004 - 14:18:50 CDT)
- Re: AMBER: Moil-view, prmtop, inpcrd question opitz_at_che.udel.edu (Mon Aug 16 2004 - 14:51:30 CDT)
- AMBER: Bug: ptraj adds spurious box information Don Bashford (Fri Aug 13 2004 - 15:27:54 CDT)
- AMBER: simulated annealing Lee SL (Sat Aug 14 2004 - 04:51:14 CDT)
- AMBER: residue database Lihua Wang (Sat Aug 14 2004 - 16:55:59 CDT)
- AMBER: About the Amber constraint constant Yuhui Cheng (Sun Aug 15 2004 - 03:12:50 CDT)
- AMBER: installing amber8 Dr Gavin Seddon (Mon Aug 16 2004 - 04:20:20 CDT)
- AMBER: ANAL memory problem. Osman Gani (Mon Aug 16 2004 - 08:16:15 CDT)
- AMBER: temperature control in coupled potential runs M. L. Dodson (Mon Aug 16 2004 - 14:05:49 CDT)
- AMBER: Improving PMEMD performance on gigabit ethernet Linux clusters Robert Duke (Mon Aug 16 2004 - 16:17:45 CDT)
- AMBER: Amber: Anal program format Helios (Tue Aug 17 2004 - 01:15:57 CDT)
- AMBER: peoblemwith RED II anshul_at_imtech.res.in (Tue Aug 17 2004 - 14:15:30 CDT)
- AMBER: Improving PMEMD Performance on gigabit ethernet - CORRECTION Robert Duke (Tue Aug 17 2004 - 07:42:33 CDT)
- AMBER: leap: impose Guanglei Cui (Tue Aug 17 2004 - 13:44:04 CDT)
- AMBER: RESP calculation with different multiplicities Sebastian Fernandez Alberti (Tue Aug 17 2004 - 15:44:54 CDT)
- AMBER: turning off HB interactions Taner E. Dirama (Tue Aug 17 2004 - 15:12:34 CDT)
- AMBER: Dr. Herman Von Grafenstein Harsh Parikh (Tue Aug 17 2004 - 18:43:06 CDT)
- AMBER: mm-gbsa Oliver Hucke (Tue Aug 17 2004 - 18:59:21 CDT)
- AMBER: intrinsic born radius of Br Oliver Hucke (Tue Aug 17 2004 - 20:33:18 CDT)
- AMBER: thermal ellipsoid-DNA RAJA SWAMINATHAN (Thu Aug 19 2004 - 04:29:34 CDT)
- AMBER: angle bending Gustavo Pierdominici Sottile (Thu Aug 19 2004 - 07:31:21 CDT)
- AMBER: metal atoms in Xleap Atilio Anzellotti (Thu Aug 19 2004 - 10:05:23 CDT)
- AMBER: how to read in CHARMM or AMBER binary trajectories Grace Li (Thu Aug 19 2004 - 13:19:48 CDT)
- AMBER: born radius and screening parameter for Br Oliver Hucke (Thu Aug 19 2004 - 17:58:44 CDT)
- AMBER: questions on mm_pbsa cailliez (Fri Aug 20 2004 - 07:13:51 CDT)
- AMBER: Updating Amber 7 Johnson Agbo (Fri Aug 20 2004 - 13:52:23 CDT)
- AMBER: mm_pbsa.pl in Amber8 Shan, Jufang (Fri Aug 20 2004 - 14:13:54 CDT)
- AMBER: Minimization error opitz_at_che.udel.edu (Fri Aug 20 2004 - 14:43:31 CDT)
- RE: AMBER: Minimization error Ross Walker (Fri Aug 20 2004 - 17:48:27 CDT)
- Re: AMBER: Minimization error opitz_at_che.udel.edu (Tue Aug 24 2004 - 16:09:15 CDT)
- Re: AMBER: Minimization error opitz_at_che.udel.edu (Wed Aug 25 2004 - 15:55:24 CDT)
- Re: AMBER: Minimization error opitz_at_che.udel.edu (Fri Aug 27 2004 - 15:56:46 CDT)
- AMBER: Increasing MAXATOM in antechamber Niko Jukarainen (Sat Aug 21 2004 - 04:45:08 CDT)
- AMBER: Sander : Vrand flag sachin patil (Mon Aug 23 2004 - 12:59:30 CDT)
- AMBER: error estimates in AMBER Grace Li (Mon Aug 23 2004 - 15:43:14 CDT)
- AMBER: NTT=0 and TAUTP Gabbar Daaku (Mon Aug 23 2004 - 17:25:26 CDT)
- AMBER: how to deal with the initial structure? hj zou (Mon Aug 23 2004 - 20:48:22 CDT)
- RE: AMBER: how to deal with the initial structure? Ross Walker (Mon Aug 23 2004 - 21:19:23 CDT)
- Re: AMBER: how to deal with the initial structure? Furse, Kristina Elisabet (Tue Aug 24 2004 - 14:29:39 CDT)
- AMBER: Trajectory file conversion between Amber & Charmm CK Sim (Tue Aug 24 2004 - 15:42:19 CDT)
- RE: AMBER: Trajectory file conversion between Amber & Charmm Ross Walker (Tue Aug 24 2004 - 18:51:17 CDT)
- AMBER: Amber 8 - Energy Minimization Parameters Nhat-hang Duong (Wed Aug 25 2004 - 10:34:28 CDT)
- RE: AMBER: Amber 8 - Energy Minimization Parameters Ross Walker (Wed Aug 25 2004 - 11:02:31 CDT)
- RE: AMBER: Amber 8 - Energy Minimization Parameters Nhat-hang Duong (Wed Aug 25 2004 - 15:26:56 CDT)
- AMBER: Amber8 - Floating point Nhat-hang Duong (Thu Aug 26 2004 - 08:28:24 CDT)
- Re: AMBER: Amber8 - Floating point Carlos Simmerling (Thu Aug 26 2004 - 09:00:52 CDT)
- Re: AMBER: Amber8 - Floating point Nhat-hang Duong (Thu Aug 26 2004 - 09:15:00 CDT)
- Re: AMBER: Amber8 - Floating point Carlos Simmerling (Thu Aug 26 2004 - 09:25:31 CDT)
- Re: AMBER: Amber8 - Floating point Michael Crowley (Thu Aug 26 2004 - 10:56:06 CDT)
- Re: AMBER: Amber8 - Floating point Nhat-hang Duong (Thu Aug 26 2004 - 11:51:28 CDT)
- RE: AMBER: Trajectory file conversion between Amber & Charmm CK Sim (Mon Sep 20 2004 - 12:45:09 CDT)
- Re: AMBER: Trajectory file conversion between Amber & Charmm Carlos Simmerling (Mon Sep 20 2004 - 12:59:41 CDT)
- RE: AMBER: Trajectory file conversion between Amber & Charmm Thomas E. Cheatham, III (Mon Sep 20 2004 - 13:18:46 CDT)
- AMBER: Trajectory file conversion between Amber & Charmm CK Sim (Tue Aug 24 2004 - 15:42:19 CDT)
- AMBER: problem loading pdb in leap. anshul_at_imtech.res.in (Tue Aug 24 2004 - 09:52:05 CDT)
- AMBER: mutation of Tyr to Leu with TI Oliver Hucke (Tue Aug 24 2004 - 18:56:47 CDT)
- AMBER: density calculation in AMBER output Grace Li (Wed Aug 25 2004 - 08:51:47 CDT)
- AMBER: restart a MD after replacing molecules cailliez (Wed Aug 25 2004 - 09:03:41 CDT)
- AMBER: Lennard-Jones particle simulation Guanglei Cui (Wed Aug 25 2004 - 14:38:57 CDT)
- AMBER: About tree st