AMBER Archive (2004)

Subject: AMBER: How to covalently bind a ligand to a residue?

From: Ozlem Demir (demir_at_qtp.ufl.edu)
Date: Thu Aug 05 2004 - 10:54:19 CDT

Hi All,

I wanna combine a sugar ligand to a Tyr residue from its O atom. I have prep
file for the ligand from Glycam. I also modified Tyr by deleting the H of Tyr
hydroxyl and formed a new prep file for Tyrosyl. Can anybody help me how to bond
these covalently and form a new prep file for the ligand bound Tyrosyl group?

Best,

O.D.

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