AMBER Archive (2004)

Subject: Re: AMBER: a question on MM-PBSA and Delphi

From: Thomas Steinbrecher (steinbrt_at_scripps.edu)
Date: Wed Jun 23 2004 - 10:13:48 CDT

Hi Jiayun,

> But I found that Delphi could only recognize the file with "pdb" extension
> at the end but not those like *.pdb.1, *.pdb.2.Could anyone tell me how to
> change "mm-pbsa.pl" to generate pdb files with "pdb" at the end.

This should not happen. Normaly Delphi needs files named fort1, fort2...
etc as input. mmpbsa should generate links to your files with the correct
names. However, I have only used Delphi4, where this problem does not
occur.

Regards,

Thomas

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