AMBER Archive (2004)

Subject: AMBER: Re: CCL:Helical parameters extraction from trajectory

From: Peter Gannett (pgannett_at_hsc.wvu.edu)
Date: Fri May 28 2004 - 06:47:08 CDT

Patrick:

Dials and Windows may help you to do this as it can analyze the entire
trajectory. See

http://ludwig.chem.wesleyan.edu/~wwang/mdtool/

for information, etc.

Pete Gannett

>>> ladam <ladam_at_smbh.smbh.univ-paris13.fr> 5/27/2004 6:27:21 AM >>>
Hi all,
I would like to extract helical parameters from trajectory files
(in trj or dcd format). As far as I know the only way to do it
is to extract pdb files from the trajectory and analyse them
one by one with the Curves program (R. Lavery). This is rather
painfull when dealing with big trajectories, so I'd like to
know if someone as a trick or a program to extract helical
parameters from trajectories?
Thank you 

-- 
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| Patrick LADAM                   |                               |
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