AMBER Archive (2004)

Subject: Re: AMBER: memory problem in NMODE

From: David A. Case (case_at_scripps.edu)
Date: Mon Apr 19 2004 - 19:56:44 CDT

On Mon, Apr 19, 2004, xhu1_at_memphis.edu wrote:
>
> Yes, when a protein has 10 residues, 184 atoms, it works under the
> original parameter(MAXMEMX=15000000), because the required memory for
> real words is just 467183. When a protein has more than 20 residues,
> 346 atoms, it doesn't work under the original parameter. The output
> stopped at "increase the real memory by xxxxxxxxx words"

But what about something greater than 20 but less than 198 resdiues, i.e.
something were you need to increase the memory size, but to something less
than 140 million words?

...dac 

-- 

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David A. Case                     |  e-mail:      case_at_scripps.edu
Dept. of Molecular Biology, TPC15 |  fax:          +1-858-784-8896
The Scripps Research Institute    |  phone:        +1-858-784-9768
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