#!/bin/sh

files=`ls f36g???.pdb`
for file in $files
do
   num=`echo $file | sed -e 's/f36g//' | sed -e 's/\.pdb//'`
   echo "cacy = loadpdb f36g${num}.pdb" > leap.src
   echo "saveamberparm cacy prmtop.leap91 f36g${num}.xyz" >> leap.src
   echo "quit" >> leap.src

   ./tleap.ff91

#   rm leap.log
#   rm leap.src
done