Per Atom Solvent Accessible Surface Area for Calcium-Binding Proteins

Get the per RESIDUE solvent accessible surface area. This is a cgi script that allows you to get the per residue surface area for any residue in one of these proteins, and automatically get the surface area for homologous residues in any of the other proteins.

If you would prefer, feel free to download and use res_surf, an awk script that I wrote that calculates the per residue solvent accessible surface of one protein at a time.

The surface areas reported in these files were calculated using CHARMM. To see a sample command file to produce this type of output click here. To get the total solvent accessible surface area, multiply the average per atom value (reported as wave, at the bottom of the page) by the number of atoms.

• apo calbindin D(9k) (1CLB NMR structure)
• Calcium-loaded calbindin D(9k) (2BCB NMR structure)
• Models of calbindin D(9k) in the open conformation Scripps and Lund Only
• Apo calmodulin
  • N-terminal domain
    • 1CFC structures (NMR)
    • 1DMO structures (NMR)
  • C-terminal domain
    • 1CFC structures (NMR)
    • 1DMO structures (NMR)
• Calcium-loaded calmodulin (1CLL structure)
  • N-terminal domain (xtal)
  • C-terminal domain (xtal)
• Troponin C
  • Apo N-terminal domain (xtal)
  • Calcium-loaded C-terminal domain (xtal)
  • Calcium-loaded full length TnC (NMR)

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