
=>> Init data
    Presuming executables of amber suite to be in /usr/local/amber10/exe

=>> Reading input parameters
    Found PREFIX => 1sve
    Found PATH => ../snapshot/
    Found COMPLEX => 1
    Found RECEPTOR => 1
    Found LIGAND => 1
    Found COMPT => ../com.prmtop
    Found RECPT => ../rec.prmtop
    Found LIGPT => ../lig.prmtop
    Found GC => 0
    Found AS => 0
    Found DC => 0
    Found MM => 0
    Found GB => 0
    Found PB => 0
    Found MS => 0
    Found NM => 1
    Found PROC => 2
    Found REFE => 0
    Found INDI => 1.0
    Found EXDI => 80.0
    Found SCALE => 2
    Found LINIT => 1000
    Found PRBRAD => 1.4
    Found ISTRNG => 0.0
    Found RADIOPT => 0
    Found NPOPT => 1
    Found CAVITY_SURFTEN => 0.0072
    Found CAVITY_OFFSET => 0.00
    Found SURFTEN => 0.0072
    Found SURFOFF => 0.00
    Found DIELC => 1.0
    Found IGB => 2
    Found GBSA => 1
    Found SALTCON => 0.00
    Found EXTDIEL => 80.0
    Found INTDIEL => 1.0
    Found SURFTEN => 0.0072
    Found SURFOFF => 0.00
    Found PROBE => 0.0
    Found DIELC => 4
    Found MAXCYC => 10000
    Found DRMS => 0.0001

=>> Checking sanity
    Checking GENERAL
    Setting START to default 1
    Setting STOP to default 10e10
    Setting OFFSET to default 1
    Setting VERBOSE to default 0
    Checking NM

=>> Creating input
    Nmode input

=>> Calculating energy / entropy contributions
    Calc contrib for ../snapshot/1sve_com.crd.1
        Minimize structure
        Calc entropy
