AMBER Archive (2009)

Subject: Re: [AMBER] Regarding rigid bond

From: aneesh cna (aneeshcna_at_gmail.com)
Date: Mon Nov 30 2009 - 23:35:03 CST

Dear Prof. Carlos,
 Thanks for your immediate reply. In my case, system contains three
different kinds of molecules and I am using United Atom model for molecule
No.-1 ( parameters from literature where all bonds were treated as rigid).
How can I keep these type of bond rigidity in Amber. I am using Amber 9.0
version.

Thanks in advance

Regards
Aneesh

On Fri, Nov 27, 2009 at 11:54 PM, Carlos Simmerling <
carlos.simmerling_at_gmail.com> wrote:

> Check the NTC variable options in the manual
>
>
> On Nov 27, 2009, at 12:29 PM, aneesh cna <aneeshcna_at_gmail.com> wrote:
>
> Dear amber users,
>>
>> I am using Amber 9.0 version. I would like to keep rigid
>> bonds in the molecule under study during the simulation. How can I
>> implement
>> this in Amber?. Waiting for your reply
>>
>> Thanks in advance
>> Aneesh
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