AMBER Archive (2009)

Subject: [AMBER] how to use GLYCAM04 for carbonhydrate in amber9?

From: sculiujl (sculiujl_at_163.com)
Date: Sun Nov 29 2009 - 21:39:08 CST

Hi amber users,
 I want to study the interactions between the carbonhydrate and the protein.As you know there is GLYCAM04 carbonhydate force field in amber9.
But as a green hand in the present I donot know how to use the GLYCAM04
to build the carbonhydate model.
And for the carbonhydate part whether should I calculate the resp charge alone or it has included in the GLYCAM04. At the same time
how to combine GLYCAM04 with other force field which I will choose to deal with the protein.
Thank you in advance.
 

 

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